| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_33740-0.5 | LYSINE-SPECIFIC DEMETHYLASE | Bpl_scaf_33740 | 43292 | 76349 | - |
| CDS | |||||
| Bpl_scaf_33740-0.5 | |||||
| Transcript |
| Bpl_scaf_33740-0.5 |
| Protein |
| Bpl_scaf_33740-0.5 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | ARID |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01388 | ARID | ARID/BRIGHT DNA binding domain | Domain | Interproscan |
| PF02373 | JmjC | JmjC domain, hydroxylase | Domain | Interproscan |
| PF02375 | JmjN | jmjN domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001606 | Domain | ARID DNA-binding domain | Interproscan |
| IPR003347 | Domain | JmjC domain | Interproscan |
| IPR003349 | Domain | JmjN domain | Interproscan |
| IPR036431 | Homologous_superfamily | ARID DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10694 | LYSINE-SPECIFIC DEMETHYLASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000785 | Cellular Component | chromatin | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006338 | Biological Process | chromatin remodeling | Interproscan |
| GO:0010468 | Biological Process | regulation of gene expression | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11478 | JARID2, JMJ; protein Jumonji | - | Signaling pathways regulating pluripotency of stem cells | ko04550 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_33740-0.5 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
