Gene detail

Detailed information of Bpl_scaf_33700-0.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_33700-0.11	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25	Bpl_scaf_33700	41637	95159	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_33700-0.11

ATGGTAGTTTCTGACAGTTCTAAAAACCCCTCAGATGTCGTGTTTGTTATTGAAGGGACGGCTAATCTTGGAGGCTACATCGACATTTTAAAAGAGAATTATATAAAGCCGACATTAGAAGTTTTTAATGGAGGACCACCAGACCCTACAGACTATGGACGTGATTACAGTTGTACCTTGTATAACATGGTTACATTTTACTCAGCTGATATCATGCCAGATCCCGCTGCAAGATGTTCAGATGTAACTCCAAATATACATGAGTTTTTAACATGGCTAGATAGCACACCAATTCCTGTCCAGAAGCATTGTATCTTGGTCTGTAATTCTAAACCGTACCAGTTACCTAGTCAAGAAGGATCAAGATACCTTGGTTTTAACTGTGATCAGCTGGCTGCAATGATGGCACAGGTAAGATACCTTGGTTGTAATTGTGATCAGCTGACTGCAATGATGGCACAGGTAAGATACCTTGGTTGTAATTGTGATCAGCTGACTGTAATGATGGCACATGTAAGATACCTTGGTTGTAATTGTGATCAGCTGACTGCAATGATGGCACAGGTAAAATATCTTGGTTTTAGCTGTGATCAGCTGGCTGCAATGATGGCACAGGTAAGATACGTTGGTTTTAACTGTGATCAGCTGACTACAATGATGGCACAGGTAAGATACCTTGGTTTTAACTGTGATCATCAGCTGACTGCAATGATGGCACAGGTAAGATACCTTGGTTTTAACTGTGATCAGCTGGCTGCAATGATGGCACAGCTGACTGCAATGATGGCACAGGTAAGATACCTTGGTTTTAACTGTGATCATCAGCTGACTGCAATGATGGCACAGGTAAGATACCTTGGTTTTAACTGTGATCAGCTGGCTGCAATGATGGCACAGTCGACTAATTCAGAGATACCTATGATGTCTAGTAACAGCTTTACGGTAGATCCTAGACACCACATACTTTTACATGGTTATCAGCTGGAAGAGAGATCTCTAAGTCCATCAGTGGAATCTATCAAAGCAGATAAAATAGATTCAAGATCTGACATATGTTCTTCGCCATCTTTCATCATACCTAATGCCCCTATCAGTCGTGCCTACTCACCATCAAGTACAGTCCCACAGACATCACAATTCCAACAACAACAACAGATTCCTAACTTTGGACAGCCTAATCCACAACAACAACAGCAACAAATGCAGATGCCAGGAAATCAACTTGGAACACATCCATCACAACAACAACAACAACAACAGCAGCAGCCACAGATGTTTGGACAACAGAACCAGCAACAACAGTTTGGGAACCAGTTTAATATGGACAACCATGGCACCAGAATGCCAGCTATTAATCCAGCTATAAACCCAGCTGGCACCATGCAACAATCTACAGGCTCTACAGGAGGAATAATGTCAACTTCTACAGGCATGACATCGTCACAGCCGGGAGTACCGCAGGCTATCCCTCCTGGAATAGATACAGCTGTGGGCAACTTGCCAATCATTCCCAATCCACCGATACAGGGACAGAACAAGGACAGGAAAATTATATGGTCTGGAATGCTCGAGTATCAAGAAAAGATCAAATCTTCAGGGCCAGCTCAACCAAAACTGTCTCGTCAACTACAGTGTCAGTTGTCTATTGGTGCTGCTGATGGTGAAATCAACACAACAAATTGGCCCAAGGAACTTATCATGCAGTTGATTCCCCAGTCATTATTGAGTTCTCCACAGTTACAACCCTTATTTAAAAGTTCTCGCCAGGTGGCATTTCACTTTGGCAACCATAATGTTGACTCACTGAGGAATCTACATAGAACAATGGGCTCTGGTTTTGCTGGTTGTGTTCATTTCCCTCCCGGTACACAGTGTGACGTTCGAGTGTTATTACTGCTGTTTAGTAATAAAAGAAAAGCGTTTATAGGACTAATACCTAACGATCAGAAGGCTTTTGTTGATGGCATTCGTAATGTGATATTTACTCATAAAATTAAGCAAGCCCAACAAGCTCAGCAAGCAGGAGGGAGCCCACAACAGTTTGGACAACAACCAGGGTTACAGATGGCACAGGGCATGTCAAATTCACCACAACAAATGCAACAGCCAGGAGCAGCTAATGCTATGGCTTCAACAGGAATGGTCACACAGACATCTAATATGATACCACAACAAGGAAACATACAACAGATGTCACAACAACAAGCCATGCAGCAAAAGATCCAGCAAGCAAAGTTACAACAAGAACAACAAGTTAAACAACAACAGTTGTTAGATGAGATATATTTTGGCCCACCGCCAAATATGTATAGTGCACATCAACGTCAGATTCAGCAACAAAGGTTACAAGTTCAACAACAACAACAACAACAGCAACAACAACAACAACAGCAGCAGCAACAACAACAACAACAACAACATCAAGCCAGTCAAGTCAGCAACCATCAACTTCAACAACTGTTACTAAACCAACAGCAACAAGGACAACAGATCAGACAGCCCCAAATGATGATGCAACAGCAACTGAGGGGACCTGGTCCCAACCCCCAGGGACAACAGAATGTGATGGGAGGAGGTCAGCAAATGATGCCCAATACATTGCAACAAATCGCTCAACCTGGACAAGTCATAGGACAAGGTCAAACAAACATTTTGGACGATTTCAATTTTGGAGATCTGATGTAG

Transcript

Bpl_scaf_33700-0.11

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11232	Med25	Mediator complex subunit 25 PTOV activation and synapsin 2	Domain	Interproscan
PF11265	Med25_VWA	Mediator complex subunit 25 von Willebrand factor type A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021394	Domain	Mediator complex, subunit Med25, PTOV domain	Interproscan
IPR021419	Domain	Mediator of RNA polymerase II transcription subunit 25, von Willebrand factor type A domain	Interproscan
IPR038196	Homologous_superfamily	Mediator complex subunit 25, PTOV domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12433	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15168	MED25; mediator of RNA polymerase II transcription subunit 25	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_33700-0.11 global RNA-seq network