| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_3367-4.5 | TYROSYL-DNA PHOSPHODIESTERASE 1 | Bpl_scaf_3367 | 426566 | 443330 | + |
| CDS | |||||
| Bpl_scaf_3367-4.5 | |||||
| Transcript |
| Bpl_scaf_3367-4.5 |
| Protein |
| Bpl_scaf_3367-4.5 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06087 | Tyr-DNA_phospho | Tyrosyl-DNA phosphodiesterase | Family | Interproscan |
| PF10283 | zf-CCHH | PBZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010347 | Family | Tyrosyl-DNA phosphodiesterase I | Interproscan |
| IPR019406 | Domain | Aprataxin and PNK-like factor, PBZ domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12415 | TYROSYL-DNA PHOSPHODIESTERASE 1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003690 | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0003697 | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0008081 | Molecular Function | phosphoric diester hydrolase activity | Interproscan |
| GO:0017005 | Molecular Function | 3'-tyrosyl-DNA phosphodiesterase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10862 | TDP1; tyrosyl-DNA phosphodiesterase 1 | EC:3.1.4.- | Base excision repair | ko03410 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_3367-4.5 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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