Gene detail

Detailed information of Bpl_scaf_33596-11.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_33596-11.3	RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1	Bpl_scaf_33596	1127590	1148286	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_33596-11.3

GACCATGACGACTTCGAGGAATACGATGCTCTTGTAGTAGACACTTCGGAACAGATTGACGGGGATGTTTCTCAAAAACAGATCAGAGAAAGCGATTCTTTTCTGACGAATGAGGATAAGGATACATCTTGTACTAACAACAGTCTCCTGGAAATAAATCTCAACACAGCGTCCTTTTTAGACGGGAGTAGTTCAAATTCATCTTGGACACCACCGCTATCTTCATCTGCACAACTAAGTCCTAGTTCAATCAGTGCAAGTATATCTGCTGCAAAAACACACAGACGAGGAAAAAAGAATCACATTAAAGATCAGACGAGTAATGATGAAAACCATGACGAGAATGAAAACAAGATTCTTCCAATAAATGGAGATGGAGAGGAAGCTGTCTATCAGTGTCCTATCTGTCAAGAAGTAGTCTCGTCATCTCATGATCTCACCGTCCACATTAGAACTCATAATACCCACGCAGCGGCAGCTCAATCAAATACCTGTACAATCTGTGGCAAAATTCTCAGTTCTCAGAGCTCATTAGACAGACACATGCTCGTCCATTCAGGAGAGAGACCGTTCAAGTGTAAGGTGTGTAAAATGTCATTCACGACCAATGGAAATATGCACAGGCATATGAGGATTCACTCGAAAGAAGCTGATATAGAAGCACTTGGAACTAAAATTCGTAAAAAGAGTACTCCAACCTTTAAATCAAAAGATATGTTTTTCAGTCCAATGTCAATGGGTATTGGAACAACGGCTCTTAATATGTCTACTCCGATACCATCCAGAGAATTCCAACCCAAAGGCTTGAATTTCGAAGAATCCACAGCACCATCAAATTATCGCGTGTCACCTAAAGGAATAAAAAGGCCCTTTGATTTTATAGACTGTTCTCAGAATTGGTCCATGCAAAAACCTCGGTTTCTGGAAACAACTTTGGTACCCAGACAGCCACTATCATCTTTCATTCCATTGGTTGTACCACAAGAAGTACCACAACCACCACCAAAACCAACCGAGGAGGAAATTGAACCTGAGTTGGAACTTTCTATGGTTGCAGTTGAAGTTCGACAGCCAACAGAAGAAGAAAGGGATCAGCTTCACTGCCCAGTATGTCATAAAACATTCTTATGCAAGTATGGTTATCAGAGTCATCTAGAAACTCATCCTGAACTGTCTCAGAACTGTCAACAGTGCAATTTATCTTTCAAATCTGGTCGTGAGTTAGACATGCATAAATTAGTTGCTCACAGTAAATCTAAACAGAATGACGATGATGAAAGAAGTATAAAATCGGCAGCTTCCGAAGCAGTCATTGGATTTCATGATCTCAGTTTTATGGATTTTTCAGTCACTAAATTTCCTCTCGTTGCCAAATCATGGTGTGAAGAAAACGTAAGAAAAGCAAGTAGCGACTATCACAAGTACATTTGTAAAGATTGTGGAAAAGCCTTCCCATGCAAGAGTGCATTGATTATGCATATACACACGCACAATCCCGAAAAAACGGCTCAATGTCCGTTGTGCGAATGCGACTTTATTGACAATAAAGAGTTGCACATTCACATGACAAAACACATGTCTGATAAAGCATTCGACGAAGTCATGGACAGTGACGATATCGAGGAAGACAACGAAGATGGCGACCATATTCCAGAAATGATCGGAAAACACGATTTCTTGGCCAGCTGTGGTTTGATTGCTGAGAAAAACCCACCTGATGAAAAGATTAAAAAAGAAAAATCTGTGTCGGAAACCATTTTGAATATTGAAAAAAAGGAAAACAATGATTACTTTGCCAAACTTGGACAAGTTTTCTCCCCTTTTATATCACCTATTAATCCGATGTTCAAGAAAAATGGAGAGGATGCAAAAAGTATGGCCGAATTACAAAAACTTCTACAGAATTCTCCCAACGGGATGCTTCCTACATTCCCACCTATCCCAGGAATGGAACATCTACATGGTATTAATTTGGCTCAATTTTCTGCCTTCCTGCCTTCAATGATACCGTACAGTCTTGCATCGCAGATGACACCGACATTGGCGGCCATGATGAATGCCAGTCAGATGATGAATGCAGCCTTGAGTAATCAGAACATGTCTAGTCCATTACCTACACCCCCACCCAGCAGCGAAAGTGGTAGTGGGTCTTCTGGTGAAATGACAAGTAAAGGAATGTTTCCTTGTAAATACTGTGACATGCTTTTTCCAAACTACAGAGCCTTAAAAGGTCATACACGTACCCATTTAGGCCTGTCTCCATACAAGTGTAGCTTGTGTAGTTATTCCAGTGCTGACAAGAGTACATTGATCCGACATTTCAGAACACATAATGGTGAACGTCCATTCCAATGTCGTGTATGTGACTTTGCTTTCACTACGAAGGCTAACTGTGAAAGACATGTCAGGAAAAAACATGGTAAATTTATGAAGGATGATGTAGAACAGGCTATAGGATATAACAAATATGTTCTTGAAGATAGTAACTCGTCCAACTCATTTCACTCGCCAGACACAGTGTGCAAGTATTGTAATGTTGATTTCAAATTTTTCCGAGCACTGAAACACCATCTTAGATCTCATAGCAGCTGTCGCCAGAAGCCATTCATCTGTACCAGATGTGATGTAGGGTTTTCAACGAAAGCAAACTGCATCCGCCATCTTCAAAAACAACATGTAGAAATTTCCAACAACCAGATCGAACAGTACATTTCCGTCAAAGAGCCATTTAGTATTGATGATAGCGATAAGTCTTTTGGAGATTCAGATGATGGATTACCACCTGAAATGAACGATAGAGGGACTCCTTCATCAGTGACGAGTGGAAGATCTTCTTTTCCACCAGCGGCACACACTACCCCTGTGATGTGTACTCCAGGAAGTAGTCGCCCTGACTCGCCGGTACACATTAAGTCTGAACCAATGGACGAGGAAGATGACATTATGCCATTAGACTTCAGTGTTAGATCAGGGAGTAATACCCCTGTTGAGACTCCACCAAAGAGGGAGCAACCATCATCATCATCTGGTAGAGGGGATGAACCAATGGATCTGAGTGTTAAAAAGTCGCCATCACCAGCCCCTGTCTCTAAGTCCAATCTTCTACAACATACTCGTGTTATGTATGAAAACAGTGTTCACCAGTGTCAGTTCTGTCCAATGGGATTCTCCAATCCACGAGCACTAGAGCGCCATTTGTGGCAGAGTCATCCTCAGTTAACTACCCTATTGGATCCAACCTACATTAAGTCGCTGGCTGGAACCAGTCCTTCAGTAACGGACAAACTTAAACAAGCAGTCAGTTTACGTCTGCCAATTCAAACACCAAGTGAAAACAGTGAAAATGAAGAATCAACAAGGTCGTCGAAACTGATGGATAAGATAAATAATCTACAGGCGATGAGATTAGACAAACAAGTCAAAATAGAACCTAGATCCCCTAGTACCTCAGGTCTTGACAATAGTGATTTAGCATCTGTGAATAGAATTTTAGAATCAGCGAATTCACGTCAATTTCAATCATTTTTGGCCCACGGACAAGGAAGTCTTGCAAACGAGTTGATGAGATCACGTTTGAACATGCTTAGAAATACAAACCAGGAGAGGAATGCTCCTCGTGAAAATGAAGACAGACCGTCAAGTGTTAAATCTGAAAGTAATGATGAATTGTCGGACATGCTGCCTCCTAGAGCAAGGACAGAGAATGGAGAAAGACTGGGAACAGAGAATAGAGAAGGACAGGGAGACTTGTCTATGATTATGGATATTGGAGATCTGCCCAAACAGTTGGAGAATTTTGCCAAATTAGAAAAGCAGAGATCTTTACAACAACAGTTTAACATTCCTACTACCATTGAGAAGACTAAACTAGTAGATGACAAACAACAAAACACGATTAAAAAGAAGAGGAACTCCTATGCTGATTCTCCCCACAAACTACAGTGTCCCTATTGTACCAGGACATTTCCATGGGTTAGCTCCCTTACTAGACATCTCCTGACTCATACTGGACAGAAGCCATTCAAGTGTCCTCGATGCCCTGTGACATTCTCCACCAAGTCAAACAGAGAACGCCACTTAATTCGTAAACATGGTGTAAACATGTTGGATCCACTGTCACGTCAAACCATGGACCGTCCATACAAATGTCACCTTTGTGTATTTAGCTCATTCTCAACTCAAGGAAATTTATTAAAGCATTACAAAGAGAGACATCCAAACAGCACTCTACCTGAGGCCTTGGCAGAACTAGACAGAGTAGTAACAGTCGGGATGAGTAAAACTATCCCCCCTGAAGAGAGAGGACTGGGTGGGGCTAACGGTTTCTATGACAGCAATGATAGTACTTACTTAGAAGAAGAGCAGATGAACAAGTCAATGGACAATGAAAGACTTGATGACAGGTTAATGTCTAGTGGGAGATCAGAAGTGGACGACGAGGAATTGGAAATTGACGAACCTGTTGAAATCCAACGTACCGAGGATGTCAAGCCATTCAGTGGATCTGGCGAAAAACATCTAAACCCAGAACGTGATAACTACAACGTTGACAAAATAACCGAATGCTGGAAATGTGGAGAGAAATTTGTCTCGCGGAAATTGGTGGTCCGTCACTTGAAGGAACATAATATTGATCTTCCGTTCAAATGCTATTTGTGCGATGCCTCTTTCTTCACTAGAAAAGAATGTCTCTTCCATCAGGAAAAATGTCACTCTTCTGATTGGGTGATCTTGAAGGATAAAAATAAAGTTGATATCATCGAAGATTTTTCGAAACACATGGACAAGGTGGTGGAAAATAATCTCAACAAGGTTGACCAAGATGTAGTTTTAGAGATTCCTGGACAGAATGCTGATGACCCTAAAATGGAAGTGGTTTCCGCTGATTATATGCAACGTAAAGTTTACTGCTCACTTTGTCCTAAGAGATTTTGGTCACTACAAGATCTGAGACGTCACATGCGATCTCATACAGGAGAGAGACCATTTGAATGTGACATTTGCCAGAAAAGATTCACGCTCAAGCATAGTATGATGAGACACAGGAAAAAACATACAGAATCTGGATCTCTTAGTCCTAGTGATGATGAAGAAAATAACCATAACGATGACCAGCCAACACAGAAATCTACCAACCGTCCAATATTACCTCGGATGACCATGCCTCTAACTGTACCAGCTATGACCATGTCTGTTATACCTCCTATTACACCGAATACAAGTCTTAATGGTGGAGAAAGTGTCGGGGAAAGTCGTGGACATTATGGTCTTCCCAAGGTGATTCCTTCCAAACCAACCCCATCGGCAACAGCTGTCTCAGGATTATCATTGGGGAAGGACAGTGAAGCTGACATGCTACACAACCTCTTAGGAGTAGATGTGTCATCCATTGATAAAATGTTAGATTCGGCAGATTCTGCTGCTCAACTACTGGGCATGAGCAACTAA

Transcript

Bpl_scaf_33596-11.3

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13894	zf-C2H2_4	C2H2-type zinc finger	Domain	Interproscan
PF13909	zf-H2C2_5	C2H2-type zinc-finger domain	Domain	Interproscan
PF13912	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR052795	Family	Ras-responsive element-binding protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46451	RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_33596-11.3 global RNA-seq network