Gene detail

Detailed information of Bpl_scaf_33464-0.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_33464-0.3	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Bpl_scaf_33464	52576	55675	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_33464-0.3

CAAATAGCCATTTGACATCGCACTTGTCTCAGGCAGTTTGATGTAAATATGGCTAGTACACAATTTCTTTTCTGTGGACCATGTGAGAATCGTAAAGCACATCGACAGGCGAATGTATGGTGTTCCGTATGTTTGGAAGGTCTATGCAAAGAATGTGAACAACTTCACACATCCTCCAAATTATCAAAAGGTCATACTACATTTGATGACAACCATTACCCGCTATTAAAACCTTTTCTTAAAAGCCTCCAAATAAATTGTGAAAAACACAACAAAAGGTACGACTTCTACTGTCAAGACCATTCTGCGTTATGCTGCGTTAACTGTGTAACAGAAAAACATCGTCAGTGTGGAGAGGTCCAGCCAGTCGACGACCAATCAAAAAGTCTGAGAGCCTCGACAGCCTTTACCAAACTTGAACAAGGTTTTATTACAATCTTGCAAACGATAGACGAAGCTAAATCCAATCGAACAGAGAACATAAAGTTGTTGGACGAGCAGAAAAATTCCATTCAGTTAGAGATTAAAGGGGTTAGAAAAGCGTTGAACGATCACCTTGACAATTTAGAAAAAAATATATTAGACGACTTGAATACGGCTGAGCAGCGACATAGCATTGACATTGCTCAAATTGTATTTGAAATCGATACAAGAAAGCAATTCCTCCTGGACTTACAAACGATTGCAAGTTGCGTTAAGCAAATTGATTCCGGTATTCAAGCGATTCTGGCTACCAAGAAAGTAGAAGACATGTTTTTGAGCGAGAAAAAAATGCTTGACTCAATTCTGAGTGACAAAGGAAGCGAGGAGTTGCAGCTATGTCTACACCTCAGCGACAAAATCAAATCCTTGAATTTGGATTTGAAGACATTTGGAACGGTAGAAACGAAAGATTCTAAACCAATAAAACCAGTAATAGTGGTAGACGAGAAAAGAGGTTCTACAAAAAGTCTTGCACTTCCCGTTCCAGAAACAACCCAGGATCCAAGCAGAATTATGTTGAGGTTGATCAAAAAGATTAAAACGTCAAAAAGAAAGTCCAAAATTGCAACTGACTTAAGAGGTTGCGTCATTTTGTCAGACGGCAAACTTCTTTTTGCAGACTGGAGCGACAATAAAAAGTTAACGATCTTCAATGTGGAGGGAACACATGCCCGTGATATCGGACTTATTGGTAAGCCTTATGATATAACACGTCTTGACGGGGAGAGAATAGCTGTTAGTTTCCCAGAAGATTATGTTGTACAGATATTTGACGTTATAGGCAACGGTTATCCCATCTACCAGAACATAAAAATGGCCGACCAATGCTGGGGTATTTTTTACAATAACGACAAGCTATTTGTAGGATGCAATGGGCACAAAGTACAAATAATGGATTTGAGCGGACACATTGTTAAAACGGTGCCAGCTAAAGTGAATACTGTTTATTGTTTACATGTTGATGCGAACTTTGTCTACTACACCGACGAAATAAATAACACAGTTTTCTGCTGCGACTTTGACGGAAATGAAATATGGAAATTCCGAGACCCTTCTTTGAAATATCCATGCTCAGTGGCTTGTAGCCCCACCGGATACGTGTTTGTGGTTGGTACAATTTCACAAAACGTAATGGTAATGGCACCAAACGGACAACAAAGTAAATCTTTGCTGAGTAAGCTCGATGGGTTAGATGGACCGGCTGGAATTCATTATGACGCACAATCAAACCGTCTAGTCGTGGTGCTTGCCAGCTTCAAAGGACTTGTAGCACTGTATGACGTCATAACTAAACCACAATCTTTACATTTTTAATTATTCATACGTCTGTGTATATGTCATCAATTTGACAGTTTTGGTTGATGGATTTGCGGGCGGTGGGGGGTTGACCGGACCTAATTCATGACCAGAAGGTGTGGAGCGCCAATTTTATCTACTACTAGTATGCCTTAATTAGATTAGTATTTCTCTGAATATTTATGTCCAAATAGCAGGAGTTCTAATAACAAATGAGTGCATTCTGTGTGATAAGCGGTAATCTTACAGATTTACCACACAATAAGTTGATCTCCCTTGCTGTCTGACAAAAATTATTGCTTTGTTATAGAAGTTAGAGTCTATGAGAAAATATCTTAGTAATTCACATGCAGCATCTTCTGTCATATTTCTGATAATTGTTTCTGATTGGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_33464-0.3 global RNA-seq network