Gene detail

Detailed information of Bpl_scaf_3306-4.38 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_3306-4.38	TIGHT JUNCTION PROTEIN	Bpl_scaf_3306	339731	383092	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_3306-4.38

ATGTTTAGAGTCATGAGTGGAGGAGTTGACAATCCACATTTCGCTAACGGAGATCCCTCCATTGCAATCTCAGATGTACTGAAAGCAGGGCCAGCCGAGGGAAGATTACAAATAAACGACAGAGTTGTCAGCGTTAACAGTTACTCATTAGAGAATGTTGACCATAGAACTGCCATTCAAGTACTGAAGGACAGTGGTAATAAAGTTTCGTTGGTTATTAGACGTAGAGTTGTTGTACCCTCAATGATGGACCCTGAAACTCCACTGAAGATTACACTGGAAAGGAAAAGTAAAAAGGATGAAGCATCTCTAGGTTATGGTACTTTACAAGGAACCCTTCAAACACAGAAAAGTGATATAGACAATGTTAACATATACCGTCCTAACGGACCTCTAGAGGATATCTATAAAGGCAGCCCACACGACATTCCAAGGGGAGCTTACCCTCCCAGTGAACATGCTCGTTATGATGGTAGATATATCTACGACCATGAAGGCCCCCCAGTACCACCACTACCATCAGGAGTAGACCCAAATGCTCCACCACGACCACCAAGTCCTGGTAAGGAACTGTTACGCCCTGATGATTTTTACAATTCTCCACAACACAATGATGGTTACTATAGCGACAGACCAGAATCTCAGATGGACAAAGCACCAATGAGAAAACATCACCATGATGAAAGGTATGTTGGAAAGAGGAAAGATATAGTGACTGACACAAGAATGGTATTTTTTCATAAACAGCCAGAATTAGGTCTTGGTTTGAGGCTTGCTGGAGGGAATGCCACTGGTATATTTATAGCCTCTGTGCAGCCTGGTAGTGGTGCTGATGATGTGGGGCTCACTGAAGGGGATGAAATTCTAGATGCAAACAACAGAGATATTCAAGGTTTATCAAGAGAGGAAGCAGTGACCTACTTAACAAGTCTTGAAGGTCAAGTTCAAATGAAAGTCCAGTACAAAAAAGAAGATTATAAACTGTGAGCTCATTTTTCGTTAGAAGCATCAGAACAAGGAGAGCTATCTATTAACCATGGTGATATATTCCTTGTTAAGGATACTTTATTTAGAGGGAGTGTAGGATCGTGGTTAGCTGTGTCTCATGGCAAAAACAATAAAGAAAACAAAAAAGGCATCATTCCAAATAAAGCAAGAGCTGATGAAATTATGGGTACACAACAGTCCTCTGAGGCTGACAAAGAGAACACTCCGTCTAAAGGTGCACGGGGCTTGTTCAAACGGAAAACTGCCAGGCGGTCCAAGTCTCTTGGCAAGGATCACTGGGAGGATGTTATATTTTCTAATCTTACAACAAAGTTTCCTGCCTATGAGAAAGTGCTGTGGAATGGTGTCAACTTCATACGTCCAGTAGTTATATTTGGTGCTTTGTCTGATGTAGCTAGAGAGAAATTGTTGATGGAGTACCCAGATAGATTTGAATCTCCACAACAAGACAGTCGTGGTTTAGATGATGATAAGAAGAACAGATCTGGTATCATACGTCTTGGTGCAATCAAAGAAATTATCAGTAAAGGAAAACATTGTTTATTAGATGTGACGCCAAACAATGTAGACAAATTGAACTATGCCCAGTATTATCCCATTGTCATATTCTTAAAAGCAGAGAACAAAAATGTTGTGAAAGAATCTCGAGCTAGACTGGCTAAAGGTTCCAGTAAAAATCCTAAGAAACTTTATGAACAAAGCATCAAGTTAGAAAAAATGTACAGCCATTTATTCACAGAATTCACTGCATGTTATTTTTTAATTTCTTTTCAACAGCCAGAAGATAATGTTCATGATGATTATTTATTCCCGATGGCAAGTCGACTTAGTTTTGCAGGACCTCGTGAGAGTGAACAGGACTTGTCTAAACACCATGATGAGTTTGATTATTCTCCTAAACACAGAAAAAGATTGGTCAGGTCATCATCTGACCCAAGTGTCAACACCATGGAAAAAATTCCTGGCATACCTCCCTATCCTGCTCCACCAAGTTACCGTAAACCTTCCAGTCCTACTTCACCGACAGGAAATGGAATGTATGACGACAGAAGATATGTTGATCTCGACAGATCTGAAGATAGATATTATCCATCATACTACGCTGATAATCTCTCATCACGCCATCATAGTCGATCTCATATCGACCCATATGCCACAATCACACCTCATGAGCGACTGCGACCTCGTCTACCTGACGATGATCGTTGGTTTGACCCAGCTTATGATCCACAGAGTCACAAGTCGCCACAAGATCACAGACGTACAGACAGTGATCCTGCCCATCACAGTCGACATGGTGATTCCTACACCAGATACACTTCTCATCCTGCCAACAAACATGATGATTCTAAACTCAGAGAAAAATTTGGGACCAAAGGTGTTCGAAATACATCACACGATCCATACAGATTTACACGCAGTACCGCACATCCGGTGAATACATCAAGTGTGGATAAATCAAAGTTGTCTGATCTCACCGCACGATACAGGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00625	Guanylate_kin	Guanylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008144	Domain	Guanylate kinase-like domain	Interproscan
IPR008145	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13865	TIGHT JUNCTION PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005923	Cellular Component	bicellular tight junction	Interproscan
GO:0045216	Biological Process	cell-cell junction organization	Interproscan
GO:0050839	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0150105	Biological Process	protein localization to cell-cell junction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05701	TJP1, ZO1; tight junction protein 1	-	Adherens junction	ko04520	PMID: 28812709
			Tight junction	ko04530	PMID: 28812709
			Gap junction	ko04540	PMID: 28812709
			Vibrio cholerae infection	ko05110	PMID: 28812709
			Epithelial cell signaling in Helicobacter pylori infection	ko05120	PMID: 28812709
			Salmonella infection	ko05132	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_3306-4.38 global RNA-seq network