Gene detail

Detailed information of Bpl_scaf_32409-1.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_32409-1.6	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Bpl_scaf_32409	112686	144612	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_32409-1.6

ATGGCAGATGGAAATTTTCAAAACCAACCAAATAACAACCAATATTTCTACTACAACCAACAGTATCCTCCACAATTCTATTATCAATATGATCCTCAAAATTATTTTCCTCAAGATATTTCACAAAACTATTATTACCAAGGGGGAGATAATATAGATTATTATTATAGCCAAAGGGGAGATAACCCTCACAGTCCTCAGAGAGGGAATATTCAGTATAGAGGAGGAAGAGGCCAGTTACATTTCAATTCAAGAGACAATAGGGATATAGATGGACATTTTCAATCAAATAAGCAGGATCAAGTGTCAAATTTTCAAGACAATAAAGAAACAAATTTTCAGAAAGCTGATGGCAAGGAAAATATTCAGGATAGTACAAGAAATAGACATGATAGGAATTACTCTGACAACTATGTAGGAAACAGAGGAAGAGGTAGAGGATATCACAATAATTCTAGACAATTTTATAGAGGTTATCATTCTGGTCCAAATAGAGAGAACATTACTTTTAACAATAGCTCTTCTAATAATGAAAGAGATAAGACACCACAGACGAATGTTAATATAAGAAATGATTCAAAAAGGGGACAGGGACAGACAACCAGACCAGACAAATATTCGGGGGGAAGAAATGACAGAAGTAACGAGTATCATACAGACAGTAATGTTGACATTAGTGAATCAAGACAAGGCCATAGATATAGGGGAGGTAATTACAGAGGTCAAGGTCATCAACAGTATGAACGACGAGATAATAGAGATATAAGTAAGAAAGACTCGGGTAGGTCGCAGCAAGATTCTAGCAATAATACAAATAATACCCAAAATACCTATCATAGTGGAAGTGATAGAAATTCAAAAGATAGAAATAAACAGTATTCAGCGGGAGGGAGAGGATCTCCTCGACAAATAGACATGGATAGTCGTGCTAGTTTTGATAAGCGTAATAATCCAAAACAAAGAGAAAGTAATACAACAGACAGATCAAATGATGGTGAAAAACAAGACAAAAAATACAAAATGCCTTCTTCAGATAGAAAATATACAAATAAAAAGCAGATGATGAAACTATTGGCTGGCAAAGTGGACGAAACACAAAGAGGTTTATTAATAGAACAGCTGACTCTAGGAACATATGAGTGTATGGTTTGTTGTGAGACAGTAAGATGCCATCATGCCGTGTGGAATTGTTCCGGTTGTTACCATGTCTTTCATTTGAGATGTATCAAAAAGTGGGCAAGATCTCCGACAGCTTTAGTAGAAGGTGAGGGCTCAGGATGGAGATGTCCAGCTTGTCAGAAAGTCACAGATTTATACCCTAATCAATATAAGTGTTTCTGTAGTAAACTTAGAGATCCAGAATGGGATCGTATGGAAACACCACATAGCTGTGGCCAGGTTTGTGGAAAAAAGAGGGGAGATAACTGTTCACATTCATGTAACATATTATGCCATCCAGGACCATGTCCTCCATGTAGTGCTGTTGTAAATAGAACTTGTGCATGTGGTAAAGAGAGTAAGGCTGTAAAGTGTAGTATTACAGAAGTGATGAAGTGTGAGAAAGTTTGTGGTAAAGTGTTGAACTGTGGAAAACATTTCTGTAAGGCAACCTGTCACAGTGGATCATGTGATCCTTGTGAAGAAATCGTTGTTAAAGAGTGCTATGGATCACATGAGAAGAAGGAAGTAAAATGTGGATGTGCAGAATCGTTCAGTAAATCATACAGCTGTGAGAAACCATGCCTCAAAACACTGTTGTGTGGTAACCACGAATGTGATTTAATTTGTCATGCCGGTGATTGTAAAACTTGTGAAACTTTACCTGAAGTAGTAACACATTGTCCATGTGGTGCCACACCCCTTTCTGAACAGACCAAAACAACTAGGTTAAGCTGCTTAGATCCTGTACCTACATGTGAAAAAATCTGTAATAAACCATTAGGTTGTGGACCAACAGATGGCATGCATAGATGTAATGTGAACTGCCATGAAGGACCGTGTGGTCCGTGTGAAGGGGTAACAACCTTGACCTGTCGTTGTGGTGCTATTGATAAAGATATACTATGTGTTGATGTTCACCAGTATACAGAAGATCATCCGTTCACGTGTGATAAACGCTGTAACAAGAAGAGGACGTGTGGACGACATAAATGTGGACAGTTGTGTTGTGTGAATGAAGTACATTTGTGTATCCAGTTATGCAATCAAAAGTTGAGTTGTGGTCTACATAAGTGTGCTCAATTTTGTCACCGTGGCAACTGTCCACCATGTTTGATGTCAGGATATGATGAGCTGAGCTGTCATTGTGGAGCTGAAGTTATGTTGCCACCGATACCATGCGGCACAAAACCACCCGAGTGTAAAAACGTGTGTCTACGACAACATGAATGTGATCATACAGTATACCATCATTGTCACAGTGATTCAGAGTGCCCACCTTGTACTGTGTTAACAGAGAAATGGTGTATGGGCAAGCATGAGTTGAGAAAGAACATTCCTTGTCATCTGAATAATGTGTCATGTGGGTTACCTTGTAATAAAGTGTTGCCATGTCAACAGCACAAATGTTTAAAAATCTGTCATGCTGGTGACTGTCAAAAGGAGAATGAGCATTGTGTTCAGCTTTGTAGGATAAAGAGAAAAGATTGTAACCATATCTGTAGATCTCCATGCCATCATGGCTCTCCTTGTCCACAAACACCCTGTAAAGCTGAGGTTTTGTTGATGTGTAAATGTGGAAATAAAGAAGCCAAAGTGCCTTGTTTATCTGGGGCTAGCATAGCACAAGATACAGCTGAATACCAGAAATTAACTATGCAAAGTTTAGCTGGGTCACTACAGTCTGGACAACCAGTAGATATATCACATCTGGGAAAGAAAAAATTCAAGAGACAATTAGATTGTGATGCTGAGTGTGCTGTACTGGAGAGGAACCGTAGAATGGCTCTGGCTCTAGAAATCAAAAATCCTGACCTTGGTGCAAAGCTAGGAAATCCTACATATACAGACTTCCTCAAGGATTATACCAAG

Transcript

Bpl_scaf_32409-1.6

GCTTTTCATTGACGTTGACTTTTACATTTCATTTCTGTTGCAAATAACTGAACTGTTGAGCAATAGTTTTAACGATTTTTGACCCGTTACTTCGAAAACAAACTGCATTTCGTCATACATACCAGTGCTGTTTGGGATAAGTTTTGCAGTGATCAAATTATTTCCAAGTTCAAAACAGTTGACAGTGACAAAAAAAAGTCCTAACCAAATATGGCAGATGGAAATTTTCAAAACCAACCAAATAACAACCAATATTTCTACTACAACCAACAGTATCCTCCACAATTCTATTATCAATATGATCCTCAAAATTATTTTCCTCAAGATATTTCACAAAACTATTATTACCAAGGGGGAGATAATATAGATTATTATTATAGCCAAAGGGGAGATAACCCTCACAGTCCTCAGAGAGGGAATATTCAGTATAGAGGAGGAAGAGGCCAGTTACATTTCAATTCAAGAGACAATAGGGATATAGATGGACATTTTCAATCAAATAAGCAGGATCAAGTGTCAAATTTTCAAGACAATAAAGAAACAAATTTTCAGAAAGCTGATGGCAAGGAAAATATTCAGGATAGTACAAGAAATAGACATGATAGGAATTACTCTGACAACTATGTAGGAAACAGAGGAAGAGGTAGAGGATATCACAATAATTCTAGACAATTTTATAGAGGTTATCATTCTGGTCCAAATAGAGAGAACATTACTTTTAACAATAGCTCTTCTAATAATGAAAGAGATAAGACACCACAGACGAATGTTAATATAAGAAATGATTCAAAAAGGGGACAGGGACAGACAACCAGACCAGACAAATATTCGGGGGGAAGAAATGACAGAAGTAACGAGTATCATACAGACAGTAATGTTGACATTAGTGAATCAAGACAAGGCCATAGATATAGGGGAGGTAATTACAGAGGTCAAGGTCATCAACAGTATGAACGACGAGATAATAGAGATATAAGTAAGAAAGACTCGGGTAGGTCGCAGCAAGATTCTAGCAATAATACAAATAATACCCAAAATACCTATCATAGTGGAAGTGATAGAAATTCAAAAGATAGAAATAAACAGTATTCAGCGGGAGGGAGAGGATCTCCTCGACAAATAGACATGGATAGTCGTGCTAGTTTTGATAAGCGTAATAATCCAAAACAAAGAGAAAGTAATACAACAGACAGATCAAATGATGGTGAAAAACAAGACAAAAAATACAAAATGCCTTCTTCAGATAGAAAATATACAAATAAAAAGCAGATGATGAAACTATTGGCTGGCAAAGTGGACGAAACACAAAGAGGTTTATTAATAGAACAGCTGACTCTAGGAACATATGAGTGTATGGTTTGTTGTGAGACAGTAAGATGCCATCATGCCGTGTGGAATTGTTCCGGTTGTTACCATGTCTTTCATTTGAGATGTATCAAAAAGTGGGCAAGATCTCCGACAGCTTTAGTAGAAGGTGAGGGCTCAGGATGGAGATGTCCAGCTTGTCAGAAAGTCACAGATTTATACCCTAATCAATATAAGTGTTTCTGTAGTAAACTTAGAGATCCAGAATGGGATCGTATGGAAACACCACATAGCTGTGGCCAGGTTTGTGGAAAAAAGAGGGGAGATAACTGTTCACATTCATGTAACATATTATGCCATCCAGGACCATGTCCTCCATGTAGTGCTGTTGTAAATAGAACTTGTGCATGTGGTAAAGAGAGTAAGGCTGTAAAGTGTAGTATTACAGAAGTGATGAAGTGTGAGAAAGTTTGTGGTAAAGTGTTGAACTGTGGAAAACATTTCTGTAAGGCAACCTGTCACAGTGGATCATGTGATCCTTGTGAAGAAATCGTTGTTAAAGAGTGCTATGGATCACATGAGAAGAAGGAAGTAAAATGTGGATGTGCAGAATCGTTCAGTAAATCATACAGCTGTGAGAAACCATGCCTCAAAACACTGTTGTGTGGTAACCACGAATGTGATTTAATTTGTCATGCCGGTGATTGTAAAACTTGTGAAACTTTACCTGAAGTAGTAACACATTGTCCATGTGGTGCCACACCCCTTTCTGAACAGACCAAAACAACTAGGTTAAGCTGCTTAGATCCTGTACCTACATGTGAAAAAATCTGTAATAAACCATTAGGTTGTGGACCAACAGATGGCATGCATAGATGTAATGTGAACTGCCATGAAGGACCGTGTGGTCCGTGTGAAGGGGTAACAACCTTGACCTGTCGTTGTGGTGCTATTGATAAAGATATACTATGTGTTGATGTTCACCAGTATACAGAAGATCATCCGTTCACGTGTGATAAACGCTGTAACAAGAAGAGGACGTGTGGACGACATAAATGTGGACAGTTGTGTTGTGTGAATGAAGTACATTTGTGTATCCAGTTATGCAATCAAAAGTTGAGTTGTGGTCTACATAAGTGTGCTCAATTTTGTCACCGTGGCAACTGTCCACCATGTTTGATGTCAGGATATGATGAGCTGAGCTGTCATTGTGGAGCTGAAGTTATGTTGCCACCGATACCATGCGGCACAAAACCACCCGAGTGTAAAAACGTGTGTCTACGACAACATGAATGTGATCATACAGTATACCATCATTGTCACAGTGATTCAGAGTGCCCACCTTGTACTGTGTTAACAGAGAAATGGTGTATGGGCAAGCATGAGTTGAGAAAGAACATTCCTTGTCATCTGAATAATGTGTCATGTGGGTTACCTTGTAATAAAGTGTTGCCATGTCAACAGCACAAATGTTTAAAAATCTGTCATGCTGGTGACTGTCAAAAGGAGAATGAGCATTGTGTTCAGCTTTGTAGGATAAAGAGAAAAGATTGTAACCATATCTGTAGATCTCCATGCCATCATGGCTCTCCTTGTCCACAAACACCCTGTAAAGCTGAGGTTTTGTTGATGTGTAAATGTGGAAATAAAGAAGCCAAAGTGCCTTGTTTATCTGGGGCTAGCATAGCACAAGATACAGCTGAATACCAGAAATTAACTATGCAAAGTTTAGCTGGGTCACTACAGTCTGGACAACCAGTAGATATATCACATCTGGGAAAGAAAAAATTCAAGAGACAATTAGATTGTGATGCTGAGTGTGCTGTACTGGAGAGGAACCGTAGAATGGCTCTGGCTCTAGAAATCAAAAATCCTGACCTTGGTGCAAAGCTAGGAAATCCTACATATACAGACTTCCTCAAGGATTATACCAAG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-NF-X1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01422	zf-NF-X1	NF-X1 type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000967	Domain	Zinc finger, NF-X1-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR034078	Family	Transcription factor NFX1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12360	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12236	NFX1; transcriptional repressor NF-X1	-	Human papillomavirus infection	ko05165	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_32409-1.6 global RNA-seq network