Gene detail

Detailed information of Bpl_scaf_32399-7.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_32399-7.4	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Bpl_scaf_32399	711641	766163	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_32399-7.4

ATGGCGACTTACATGGGGAAAAAATGTTTTGTACATTTGATGAAAAATCACACCACAAACATTTACAATAGATCGTCATGGTTACAGTTTCAAAGACAAAATCAAACTACTGCAGTAGTAACTAACAGAAAAGATGTAAAGAAAAAAGACAAACCTGCATTTGTTATTCCGAAGAAAAAGAAGAGAGATTCTTTGTCTGTGTTGAAACGTTTGGCAGCAACTGTTCAAAAGGATCCCACAGCACCAGACTATTTATTTATAGATGATCCATACCTCATACCAATAAATAATGAGGAAAAGAAAATTTATGCCTTATCAAAATCAGGGGGACGTAAAGCTGCACGGTACATTGTTGACAATTACCCAGAAGCCTTTCGTACAGATATGTTTCATGACGTGGCATCTGTTCCACATATTGAGGCTTTTATGCCAAAGAAAATTAAATATGAATATCATGAACCATGTGAAGCTGCCTTATCTGAGAGAATAGAAATGAGAAAAGTCAAGGATGCTATTGACATGTACAATCAAATGAAAGAACAAGGTTTAGAAGTTTCAGAAGAGACACATTTATCTTTACTACACCTGTTAACAGTCTTCAACAGTAAAGACCCAAAGCCAGATTCTATTCCAGAAGAATTCAAATTTAGAAAAGTTCTTGGATTAAATTCAAAAGTATTTCATAAAACTTGGCAGACTGATGGTCCAGCTGAGCAAGTCTTTGCAGATTTACCTGTGAAAACACCTGAAGCTTATTGTAGTTTAATTAAAGGTTTTTGCAAGTATTTACAAACTGATGGAGCATTTAAACTATATAACGAAATGGTGGAGAAAGACCTGCCAATTGATGTTAACACTTATAATGCATTGATATATGCCTGTATACACTACTTTACAAATGATGCATCTAGATGGCCACAAGTTCTAGAAATTCTTCAGCACATGAAAGCAAAAAATGTTCTTCCAACTGTTGATACCTTTCTGAACGTTTTATTAACTTTAAAAATGTGCAGAAGAATCAGAGAGAAGGAAGTTTTTAAAGTTTTAAATGAAATGAAAGCAATAAATATTGAACCAACACTTGGAATTTTCAAACTGGTCAACACAATAGTATATGCTGATGAAAACAGTGCTCATCCATTTATTTATGAAGTCATTGATTACTTACAAGATAAAGAGTTTGAAGTTTCTTCAATGCATGATTGTGATTTCTTCCTCAGTGCTATGGAGGCTTGTTACAGAAACTTACATGATGTTCAGCTTGCACATAAAGTAGATGCATTACTTAATTCCAAAGATTATTACAAGTTTATGTCAGATGTCGACACAGAAAATCTCTATAGTTGGAAATATTTTTCCTTAGTTTGCCAATTTGAATCTATTGAGAAAATTATGGGAATTTATCAAAGATTAGTGCCTAACACATGGGCACCTAGATATAGTGGTTACCTAGAACTTTTTAATGCTGTAGATCTTCACGATGGCTTCCATTATTTGCCTGCAATTTGGTCAGATTTATTGATGGTCAACTTTCTAGGTCAAATTATTTTGAAACCATTTTTTAAGCTAATAGTCAAGAAGAAGCATGAACCAGAGCTTCAACAGAAATTTGCTGATATTGTTGATAGTGTAATAGAAAAATGGCATAATATGTCAACTACTACAAGGATACAAGTTGGAATAACAGGACCAATGATTGGTGATTTTATCATCATCAAATTGCATGCTGACAGATTTGATGAAGCATGGTCATTATTTGAATTATATAAAGCACGTCAAAAAACATTCTCAGCAACAATTACTGAACTCTCTATTCAGATGTTAGTAGATGAATGTATTAAAATGAAGGACAGTGATAAAGCCATAAAATGTATACAGTTAATGGCAAAAGAAGAGTTTCCAAGTTTAAAGATATATGAGAAGAAAGTTAGTGAAGAAATGGAGCTGACAGATCTCGAAAGGCAACACGTAGATGTAATATGA

Transcript

Bpl_scaf_32399-7.4

ATCTATCGAACGCTTAAAATGGCGACTTACATGGGGAAAAAATGTTTTGTACATTTGATGAAAAATCACACCACAAACATTTACAATAGATCGTCATGGTTACAGTTTCAAAGACAAAATCAAACTACTGCAGTAGTAACTAACAGAAAAGATGTAAAGAAAAAAGACAAACCTGCATTTGTTATTCCGAAGAAAAAGAAGAGAGATTCTTTGTCTGTGTTGAAACGTTTGGCAGCAACTGTTCAAAAGGATCCCACAGCACCAGACTATTTATTTATAGATGATCCATACCTCATACCAATAAATAATGAGGAAAAGAAAATTTATGCCTTATCAAAATCAGGGGGACGTAAAGCTGCACGGTACATTGTTGACAATTACCCAGAAGCCTTTCGTACAGATATGTTTCATGACGTGGCATCTGTTCCACATATTGAGGCTTTTATGCCAAAGAAAATTAAATATGAATATCATGAACCATGTGAAGCTGCCTTATCTGAGAGAATAGAAATGAGAAAAGTCAAGGATGCTATTGACATGTACAATCAAATGAAAGAACAAGGTTTAGAAGTTTCAGAAGAGACACATTTATCTTTACTACACCTGTTAACAGTCTTCAACAGTAAAGACCCAAAGCCAGATTCTATTCCAGAAGAATTCAAATTTAGAAAAGTTCTTGGATTAAATTCAAAAGTATTTCATAAAACTTGGCAGACTGATGGTCCAGCTGAGCAAGTCTTTGCAGATTTACCTGTGAAAACACCTGAAGCTTATTGTAGTTTAATTAAAGGTTTTTGCAAGTATTTACAAACTGATGGAGCATTTAAACTATATAACGAAATGGTGGAGAAAGACCTGCCAATTGATGTTAACACTTATAATGCATTGATATATGCCTGTATACACTACTTTACAAATGATGCATCTAGATGGCCACAAGTTCTAGAAATTCTTCAGCACATGAAAGCAAAAAATGTTCTTCCAACTGTTGATACCTTTCTGAACGTTTTATTAACTTTAAAAATGTGCAGAAGAATCAGAGAGAAGGAAGTTTTTAAAGTTTTAAATGAAATGAAAGCAATAAATATTGAACCAACACTTGGAATTTTCAAACTGGTCAACACAATAGTATATGCTGATGAAAACAGTGCTCATCCATTTATTTATGAAGTCATTGATTACTTACAAGATAAAGAGTTTGAAGTTTCTTCAATGCATGATTGTGATTTCTTCCTCAGTGCTATGGAGGCTTGTTACAGAAACTTACATGATGTTCAGCTTGCACATAAAGTAGATGCATTACTTAATTCCAAAGATTATTACAAGTTTATGTCAGATGTCGACACAGAAAATCTCTATAGTTGGAAATATTTTTCCTTAGTTTGCCAATTTGAATCTATTGAGAAAATTATGGGAATTTATCAAAGATTAGTGCCTAACACATGGGCACCTAGATATAGTGGTTACCTAGAACTTTTTAATGCTGTAGATCTTCACGATGGCTTCCATTATTTGCCTGCAATTTGGTCAGATTTATTGATGGTCAACTTTCTAGGTCAAATTATTTTGAAACCATTTTTTAAGCTAATAGTCAAGAAGAAGCATGAACCAGAGCTTCAACAGAAATTTGCTGATATTGTTGATAGTGTAATAGAAAAATGGCATAATATGTCAACTACTACAAGGATACAAGTTGGAATAACAGGACCAATGATTGGTGATTTTATCATCATCAAATTGCATGCTGACAGATTTGATGAAGCATGGTCATTATTTGAATTATATAAAGCACGTCAAAAAACATTCTCAGCAACAATTACTGAACTCTCTATTCAGATGTTAGTAGATGAATGTATTAAAATGAAGGACAGTGATAAAGCCATAAAATGTATACAGTTAATGGCAAAAGAAGAGTTTCCAAGTTTAAAGATATATGAGAAGAAAGTTAGTGAAGAAATGGAGCTGACAGATCTCGAAAGGCAACACGTAGATGTAATATGATGCAGTTGAGAATTATATTCATCTTTAGATGTTATGGTGTTCAGGATTACATCTGGCAGTGTGGTAGATAGACATGTGAAGTTTGAAGACAATATTTTGGTGTGACGATAGCTGAAGATATCCATTATTATTTCAAAATAAATCATGTGACTTGCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13041	PPR_2	PPR repeat family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037387	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17659	PTCD3; pentatricopeptide repeat domain-containing protein 3	-	Mitochondrial biogenesis	ko03029	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_32399-7.4 global RNA-seq network