Gene detail

Detailed information of Bpl_scaf_31673-2.24 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_31673-2.24	VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28	Bpl_scaf_31673	344614	360575	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_31673-2.24

AAAATTTATCGATGAAAGGGGAGATGACTCATTGTCATATCTGGAAAAGAAACCAAAACAACATTTCGTCTTCACAGAAATAATCGCAATGTTCGCACAAGTTCCTCCAAATCAACAAGCATCGGCCAACAATTCAGCCCTATATGAGGTATGACAACATGGCTGACTTGTATGCTGTTATCAACACACTACAAAGTTTAGAGAAAGCTTATATCAAAGATGCCATTCAAGCTAAAGAATACACAGCTTCATGTTCTAAATTGTTGGTACAGTATAAGATAGCCTTTAAACAAGTGCAGAGTGAATTCAATACTGTTGAAGACTTTATGAAGAAATATAGACTTGATTGTCCAGCAGCTTTAGAAAGAATAAAGGAGGATCGGCCTATTACCATAAAAGATGACAAAGGAAATACCAGTAGATGTATAGCTGATATTGTTTCTTTGTTTATAACAGTGATGGATAAACTAAGATTAGAGATCAGAGCCATGGATGAGATACATCCAGATCTTAGAGAATTAAATGAAATAATGAACAGACTGAGTATTCTTCCGGAAAATTTTGAGGGGAGAGAAAAAGTTAAAAAATGGTTGGACACATTGAGTGGTATGTCAGCACATGAAGAATTAGATGATGGACAAGTTAGACAAATGTTATTTGACTTGGACAGTGCATATAATGAATTCAACAGAAATTTACATGATCATTAGTAGATCAAACAGTAATGTACACAAACTTAAATAGGTCAAACAGAAATTCACTTGATCATTTCTAGGTCAAACAGAAATTTACATGATCATTAATAGGTCAAGTTGAAATTGCCATGATTGTTAGTAGGTCAAGTAAAGATTTACATGATTAATTGTAGGTCAAACATTATTTTATTTTATTTTATGAAAACAGAAAGTACACTATATCATGAGCAAATCTTAATATACATGTATTTCTGTTTATATGGTCATAAGAACAATAAAGGGCATGTTCAGAATTCTACCAAACTCACCCTTGGGTCACCGAAGTTGGAATCATTGCCCAAGGGTTACCCATGGGTGAAAATTTTCAAAATTGTTAATCTTGGGTGAACTCAACCAAACCAATGGTTTCCTACTGTAGCCATTTTCTTCACTTAGCACCATCCTAATATTAATAATAATTTATCTATCATAGATTCTATATATAACTCAAGTGTAAAAACCAAGTGACATTGAGGAACCAATAGTCCAAAATATTAACCATGGATGGACATTTTAATTTGATATTGGTTACCCCAGGATAAGTTTGGTGGAATTCCTAACATGCCTAAAGTGTTTTATGGATAATTTGTAAATTACCCCATTGATCTTAATTCATGATAATATCTATTATCAAGCAAACAAGCATGATATTTCTAAAGTGTATCTCGGGGATGTCATGATGATATCACTGGTATGGCCTTGACAACTTCTTTATAAACATACTATCGTTGATGTTTTTTTCTCATCCCATTTCACATCTCAGGATTCGCCTTCTATTCGGCGATATTGCTCTCAGAAATTAACAATTGTATATATTTATTTTAATCAGTCTATTTTTTTCATTTTTTTTCAATTCTCCCTATGAATCAATAATAAATGATTTATTTAATTAGAATGAGTTTATAACATCTGATTTCAATTCAGAATCAGAAGAATATCATAAAAGACATATGAGGATGGAGCTTGGATTTGTTTTGATTAAATACCATAGAAACCAATATTTCTGAAAGATTTCTTTGTAATAAAATGATGTACTGTTAATAAATGTAGTGTATATCGTTCAGTAATAAGTCTAGAGACATTCCGTATGTAATGGTGAAATTGTATTGTTAAGACATGTTACATTGAATAATATTTGTACATGTAAAATATTACACTGTATACAGTGTTGGCAACAACATATTCAAAACAAATACATGTAATTGAAAAATTGTTTGAAATATTTTATAATAAAAGTATATGCTATCATGTACATTACTTTGGAAAATATTCCCCAATAACTGTGCAAAATCCTTACTAAATTAGTGCTGAAAGAATATTAGATAAAATTCTTAAACTTAGTTTATTCATATACATGATAAAATTCTTAAACTTAGTTTATTCATATACATGATAAACACTTGAAATCTTTGTTTTTTTTAATCTTGTTAGTATGTTGTTGTTTTTAGCTCAACTGGCCAAAGGTGAAGTGAGTTATTTGTATCACTTGAAGTCCATTGTCTGTACGTTTAATTTGCCCCTGTTAACTTTTTCACATTTTAAGAACTGCTAATAAGGTATTTAATAAATTGTCTTTAAGAACCAAGAATGGAAATACAATCATATTTGGCATGAAGCAGCATTTGTGAAATGAAGATTTTACTTTCTGATGCCTATTGGATTCAAATTCTGCAGCTGGCAGATCAAATTTTACATATGCTATGATAGACAAAACTTGACCAGGTTAGCGATACAGTCTCGTGTTGGCATCTAATTTATTTATATATAATAATGTATATTTATTTATTAAACATAGCAACAAGGCAAACATAACCTTATTCAAAATGTGAAGTGAAAAATTTCAGAGATACTTTTTTTCTGAAATTGTTCCATACATATGTCAAAAGATTTGTGATAAAGCAATCATTTTTTCACTAAAAAAAAAATCTATGACAAAGTGTAAAGGACTGATAAGTAGACTTAGGGTTAGATGAAACCCAGTAACATGTACATGAGTACTTATTTACAGAGAATAAGGAAATATTGTATTATCAGCAATCTAAGTTTAAATTCTTTACCAAGTAATGGCAATTGATTTTTTTTTTTTTTTAAACATTCACCTATTCATTTTTGTTTTGATTGGTTCATTTTAATCTTTTAAAATGGAAACCTATCTTTTACCTTCCAGAAACAATTGCCACAATTGGTTTTGTTAATGATGCATTAATGTATAATTCACCCATCCTTACACATATTTAATTCCATAATTGTGTAATAGAAATACATTTGCTTCCTGATTTATTGTGTACAGTACTTAGTAAATACTGTACACAATAAATCAGGAAGCAAATCTATTTCTATTATGTACTACTTACCCTTGCTAGTTAAAGGTATTTTGAACAACCAATTACAGTATGTATTAATCTGTTTGGTGGTTTATGGGGTTTAAAGCCACTTTCAACAATATTTCAGTTATATCATGGTGGTAAGTTTTTATTGGTGGAGGAAACCGGAGTACCCGAAGAAAACCACTGACCTGCCGAAAGTCACTGACAAACTTTATCACATAATGCTGTATCAAGTGCACCTTGCCTGAGCGGGGTTCGAACTCACAATGCAAGTGGTGATAGGAACTGATTGCATAGGTAGTTGTAAATCCAACTACCATGCGATCAAGACCACAATGGCCCCTGTATAAATCAGAAGCTCTATGATTGTATATATTTATTCTATGTACGGTTTGTGACTAAAATTCTAATTTATTTGTTATATTATTGTGTTGAATAGGTAATTTGGTAACATCTTTTAAAGAGTCTAGTTAAAATTTTATTATATATAATCTATTGAAATCACTGAGTGAGAAATTTTAAAATGCTGCCAGTTTCCTGCTTTTATATGCCTTGATCAATGGTTTATTAAGTGAAGTCATAATTTTTTTTATAATAAAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03997	VPS28	VPS28 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007143	Family	Vacuolar protein sorting-associated Vps28	Interproscan
IPR017898	Domain	Vacuolar protein sorting-associated, VPS28, N-terminal	Interproscan
IPR017899	Domain	Vacuolar protein sorting-associated, VPS28, C-terminal	Interproscan
IPR037202	Homologous_superfamily	ESCRT assembly domain	Interproscan
IPR037206	Homologous_superfamily	VPS28, C-terminal domain superfamily	Interproscan
IPR038358	Homologous_superfamily	VPS28, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12937	VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000813	Cellular Component	ESCRT I complex	Interproscan
GO:0032509	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0043328	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0044877	Molecular Function	protein-containing complex binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12184	VPS28; ESCRT-I complex subunit VPS28	-	Endocytosis	ko04144	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_31673-2.24 global RNA-seq network