Gene detail

Detailed information of Bpl_scaf_31134-3.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_31134-3.15	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	Bpl_scaf_31134	357962	393143	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_31134-3.15

ATGTTTATGTGGTAAAATGTTGGATCACAGTAAAATATAGAAATAACTTTGTCATTGGGTTATCTTCAGATGTATAAGATGGCTTTGGTAGTTTTTTGTTCGATCTAATTCTGAAATTTATACCTGATTAAAAAACACAAGGTTTAAAAGAATAAGACAAAGTAAGAAGAGAAATGTTTAGAAATATTGTTGACAGTTTTAAAGGACTAGTTGATGTAGCTGGAGCCAGTATTAGTCCCTATTCAGTACAAAATGTCAAGATTGAGGACTATAAAACTATGTCAAAGCGTTCAGAAGAGGGACACTTGATTCTGTACAAGAAACATGGCTGTTATGATTGTGTTGTTGTTGGTACATCAACTCCAGTTAAAATGTGGAGTTTGTTCCGTTTAACAGGTGATGGCGAGGCCTTTGCTCAGTTTGGATTGATTTCCTCTAGACTTAATGTCCTCATTGCCAGAAGTAGCTCACTATTTCTAGAAAATAATCTACAGAAGGCGACAGACGCTATCAGAGAACACCCTTCATGGACACCTATACACATAGCAGCATACCTAGGATTGTATGAATTTTTCACCCAAGCAGACATTTTAAGTAAAATAAATGACAAGACAACTACAACAGAAGCCACACCCTTAATGATTGCCATAAGAGGTAGCCAGGTACAATGTACTGAACAGTTATTAAAGAATGGAGCTTCTCTACACATGCAGGATAACAGTGGAGAAACTGCCTATCATTATGCTGTCAAATATCACCCAAAATGTATCCCTATTCTTTCCCAGTATGATAGAGACAGTATTAAAGATTTCTTCAACAGTAAAGGACAGACAGCCCTGTTTGTGGCATGTGAAAAGGGTTTATCAGAGGCAGTAGAACAACTACTTTATGCTGGGGCAGGGCCCAATGTAACAGCTTGTGATCTATTACCTGTACATATAGCACTGAAAACAAATAATATGAGCAATGTAGAGTTGATGTGTGAGAAGTTTCCAGACCAGTTATTTGCCAAAGAACAAAAATATGGAGGAACACTTGCTCATTGGGCTAGGAACAGGGAGTCTGTAGAAAAGTTGTGTAAATTAGGATGTGATGTTAACATTATGAGTGACACAGGCCACACCCCACTACATATCATGTTAAAGAAGAACCGTAGGGAATGTATAATGGAGTTACTGGTGTATGGTGCTGACACAAGACTAGGAGATACACTTGGCAATACACCATTACATCTAGCAGTTGAGAAAGATGATATAGAACTAGTTAGGTTGTTTATTATATTTGGTGCTGATGTGAACACTCAAAATAGGAAAAATGAAACACCAAGACATTTAGCTGCTGTGTCTAAAGAAAAGAACAGGGATGCTATTTTGTATATGTTACATATATCTGGTGGCAGACGTTGTATGGAATATGCCCATGGGTGTTTGAAAGGATGTGTAATGGAAGGAAACTATAATGGTACTCCGGATGACACCATGCAACATGTGATGACACTTGACAGAGAAGCAATTTTAGATGATATGATTTCATCATTTGAAGACCCTGACCAAGATGTAGATACTTCAAATTTTTTACGAAGACACAGGGTCCTGTGTTTAGACGGAGGTGGTATACGAGGACTTTTACTAATACAGATGTTAATGGCTATAGAAGAGGCAGCAGGTATACCTATAAAGGAGTGTTTTGATTGGATATCAGGAACAAGTACTGGTGGTTTATTGGCTCTTGGGATAGCCATGGGTAAACCCCTACCTTATATGAAAGGTCTATATGTTAGATTAAAAGATGAAGTATTCAAAGGTTCACGACCTTATTCAGCAGAATTCTTTGAAACCATGTTGAAGAAAGAGCTAGGAGAAACCAAAGTTATGACAGACATCAAGGAACCTAAAGTTATAGTAACAGGTGTGTTGGCAGACAGACATCCATCACAGTTACATCTGTTTAGACACATTTCACTGTAGATACTTTAAGCTTGTAACAACTTTGTACATTGACTTAAACCTCCTCCTCCAGATGAACAGTTAATATGGCTAGCAGCAAGATCAAGTGGTGCTGCTCCTACTTATTTTAATCAAGCAAAGGCATTTGTTGATGGTGGTATGATAGCCAACAATCCAACATTAGATACACTTACAGAAATCCATCAGTATAATTGTGGTCTCAAACTCAGGAACATGAGACACTATCCAACATTACACTTAGACATAAAATAAAGTAAAGGAACAGTGCTTTTATTGCTGTTCTATATTTCATAGTATGCCGAAATGTGGTATGATAGTTAAATAAAAAAATATGATAGTAAATTAAGGACATGTTATTTATGTATTACAGGCTACTTTATCAGAAGGACCTCCAGTGGACAGATCTAGGGCCTGGTGTAGTATGTTAAACATTCCATTCTGTAGACTTAGTCCAAGAATTAGTGAAGATTTCCCATTAGACTGCCATGCTGACAAGTCTATAATACAAATGATGTGGGAAACACAATGTTATATTGTAGCTAATAAAGTTAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01734	Patatin	Patatin-like phospholipase	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR002641	Domain	Patatin-like phospholipase domain	Interproscan
IPR016035	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR047148	Family	85/88 kDa calcium-independent phospholipase A2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24139	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0016290	Molecular Function	obsolete palmitoyl-CoA hydrolase activity	Interproscan
GO:0047499	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan
GO:2000304	Biological Process	positive regulation of ceramide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16343	PLA2G6, IPLA2; calcium-independent phospholipase A2	EC:3.1.1.4	Glycerophospholipid metabolism	ko00564	PMID: 28812709
			Ether lipid metabolism	ko00565	PMID: 28812709
			Arachidonic acid metabolism	ko00590	PMID: 28812709
			Linoleic acid metabolism	ko00591	PMID: 28812709
			alpha-Linolenic acid metabolism	ko00592	PMID: 28812709
			Ras signaling pathway	ko04014	PMID: 28812709
			Vascular smooth muscle contraction	ko04270	PMID: 28812709
			Inflammatory mediator regulation of TRP channels	ko04750	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_31134-3.15 global RNA-seq network