Gene detail

Detailed information of Bpl_scaf_30977-2.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_30977-2.8	TNF RECEPTOR ASSOCIATED FACTOR	Bpl_scaf_30977	177218	198705	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_30977-2.8

GTCGTTCTTCCAGGAAGTTGATGAAAAATGGCGACACCACAACAAGAATGAAAACCCAACATTTCTAAAATATTTGTCTTTGTACATGGAAGATGGGTTATGAAGTTAACAGATTCCAAGGAGAAGTAGATGAAGAGTTAATTTGTCCAATATGTAGTAGTGTTCTGGAGGAACCTCTTCAGGCACCACAATGTGAACATGCATTTTGTGCAGCGTGCATTCAGGAATGGCTGACCCGCCAACCAACATGTCCGGTAGACAGAAACCCAATCACACCAAATCAACTAAAACCTGTCCCGCGGATTCTACGGAACCTTCTGTCTCGTCTTCAAATAACATGTGATAATGTTGGGTATGGCTGTACGGCAGTTATAAAACTGGATATGTTAGCTGCACATCTACAAGAATGTGAACACAACCCTAAGAAACCAGTACATTGCGAGCTTGGTTGTGGCTTGGTAGTGCCGAAAGATGAAATAAAGGAACACAACTGCGTGAGAGAGTTACGGAACCTGGTCCAGCAACAGCAACACAAAATGGGTGAAATGCAGACGGAATTGACGGAACATAAACTACAAATCAATGAGCAGAAACGAGAACTTCAGCTTCTTAAGGAATATATGAGATCGATGCGAGTATCAAACCCCAGGATGAGAGAAATACAAACAGAGATGGAACATGCTGATGTCATCAGGTGGAGTAACAGCTTACAGGCAGCTAGAGTAACGAGATGGGGTGGAATGATATCCACCCCTGATGCTGTGTTACAGGCTGTTATAAAGCGTGCATTGATAGACAGCGGGAGTCCATCGCATATTGTAAATGAATTAATGGAGAATGCCCATGAGAGAAGATGGCCAAGTGGACTGAGTACATTAGAAACTAGACAATTAAATAGGAGACAATATGAAAATTATGTAACTAAAAGAATTCCTGGTAAACAAGCAGTTGTGATGATATCCTGTGAAAATCAACATATGCCTGAAGATTTAATCATGGAACCAGGGATCGTTATGATATTTGCTCATGGAGTCGAGTAACTTATATATACATATGTATTTGTGATATGATCTGATTATTTTGACCGACCATGACATTATTTATATTCAATGCCAAATTATTGATTGTGATGTATAAAAGGCAACTTGATACAAATGTGTCATTTATTTCGTATGTTTTCGTTGAACTACAGTCGAATTTCCCTGTGACTTGTTTATCTACACGAATAGTAACCAGTAGCAACCAAATTTCAGTTGTAACAGGAGATCAATTCTGTTGTGTCAAGTTGTATTTCATATGTTTTAGTTGAACTACAATTGAGTCAATGTGGCTTGGTTATTTACACTAACGGTAACCAGTAGCAACCAAATTTCAGTTGTAACAAGAGAGGATAATTCTGTTGTGTCTAGTTGTATTTCGTATGTTTTCGTTGAACTACAGTTGAGTCATGCGGCTTATTTATTTACACTGATGGTAGCCAGTAGCAACCAAATTTCAGTTGTAACAGGAGGAATTTTGTTGTGTCTAGTTCTATTGCATTTCAATAACCTGTTTTAGTGCTTGTTTTTACAAAGAAAATTTAATGTATTATCTCCCTTTGTAATGTTATTTCAGACATAATGCATTATCTTCCTTGACAGTGTTGTTTATAACATCTCTGAATTATCTCCCCTTTTACAATGTTGTTTTTATCATCTCTGAATTACATACTCCCTTTTACAATGTTATTTGTAACATCTCTGAATTACTTCCCTTTGCCCATTACTGATTTTTTAACAAAAATGCTAAAAGAATTGACACAAGAATATTTTATGTTAGATATTAGAGAAAAATGTGTTTTATTAATGAAACACATGGGTCATGTTTATTTTTAAGTGGAATGGCATTCTTATCAGTTTTTTTTTCTGTAAGATAACATACATAGGTCACTGGCAATTTATGAACTCTGTTATTTTTAGATTTTGTGCGATATTATTTTAGGAGTTATTAGCTCCCCCGAGTGACCCGAAGGAGTTATTTTCATTTCTCCTATTCTTAGTGTGTTTAAGGGACCATCTTTTTATTTTATTTTAGGAGTTATCTCCCCTTCCAAGCTTTTTTTTAGTGCATTGCTAGAGAAGAATTTGACTCACAATGCCAGATTGTGATATTTCAAATTACTTTTATAACCATTTAAAAAAAATGGAATTTTATTTTCTCCCCTGTTGCTCTGATATCTTGATTCTTGGAAAAGAAAACAGAAAAATCATCTCAAGCAAGTTACAATCATCCAATATATCTACCCTACTGCAAACTGAAGCGATACCAGGGTGTATTAAATATTTGTATAGAAAGGTGGGAACATTCAACCTAACAGTATTGCCTTGGTCTACTGTCTGAACAATATCATGTATCTGAAACTTTTTGAAGGTTGTCAGTATTTGTTAGGAGTTCAGTAGGTCTAGGAATCAAATAATGAATAAAACCGGTTACATTTGTATTTAGCAACTAATGTAATGTTGTTAATTTATATAAACAGTGGTTACTTAGTAACAAATGTAAGTTAACAACTATTTTGTAAAAAAAAAATAGTGTCTAGTACGATACTAAAAAAAATAACGTTGCTAATTTATATAAACTGTGGTTACTTTGCAACAAATGTAAGTTAACAACTATTTTGTAAAAAAATATAGTGCCTAGTATATATGATACTAAAAATTATTGTTGCTAATTTAATTAAACTGGTTACTTAGCAACAAAAGTTTAGTTTACAACTGTTTTGATCGGTTTGTAAAAAAAAAAAACAGTGCCCAGTATGATACTAAATAATGAATCTTGCTAAATTAATCTGCATTGTATAATATAGTAATTTTATTGTTGATTATAAATTGCATCATGTCTATTATTAAAATTGTTGTTACTACAGTAACGGAAGCATTTGTATAGTAATATGTATATATAGATATACACACATGCACATAGAAATTGTCATCATTTCCCAAAAAATGGGAAAAATCCCTGTCTTGAAAATTCTGTACTAAATTCTGTGATTTAACAATTGTTTTTGATATCGTCAACAATAAAAATAATGTGATAT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08941	USP8_interact	USP8 interacting	Domain	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015036	Domain	E3 ubiquitin-protein ligase NRDP1	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR037255	Homologous_superfamily	NRDP1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11981	RNF41, NRDP1; E3 ubiquitin-protein ligase NRDP1	EC:2.3.2.27	Endocytosis	ko04144	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_30977-2.8 global RNA-seq network