| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_30860-0.17 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 | Bpl_scaf_30860 | 117207 | 144487 | + |
| CDS | |||||
| Bpl_scaf_30860-0.17 | |||||
| Transcript |
| Bpl_scaf_30860-0.17 |
| Protein |
| Bpl_scaf_30860-0.17 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR017383 | Family | Actin-related protein 2/3 complex subunit 1 | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10709 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005885 | Cellular Component | Arp2/3 protein complex | Interproscan |
| GO:0015629 | Cellular Component | actin cytoskeleton | Interproscan |
| GO:0034314 | Biological Process | Arp2/3 complex-mediated actin nucleation | Interproscan |
| GO:0051015 | Molecular Function | actin filament binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K05757 | ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B | - | Endocytosis | ko04144 | PMID: 28812709 |
| Regulation of actin cytoskeleton | ko04810 | PMID: 28812709 | |||
| Fc gamma R-mediated phagocytosis | ko04666 | PMID: 28812709 | |||
| Pathogenic Escherichia coli infection | ko05130 | PMID: 28812709 | |||
| Salmonella infection | ko05132 | PMID: 28812709 | |||
| Shigellosis | ko05131 | PMID: 28812709 | |||
| Bacterial invasion of epithelial cells | ko05100 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_30860-0.17 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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