Gene detail

Detailed information of Bpl_scaf_30846-0.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_30846-0.11	WD REPEAT-CONTAINING PROTEIN 75	Bpl_scaf_30846	94461	128857	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_30846-0.11

ATGACAACGAAATCGTGCCAATCCACAGAATCTCTTATTAAAGTATACAGTGTAGAGAGTGGAGAATGTATCAGGAATCTAGACGGCCATACTAATACAGTAACAGGAATTATTGTCAACCCAAATAATAAACTACAGATTTTATCATGTTCAACAGATCAAACAATAATACAGTGGGATTACTCTGATGGTGTTTTATTAAGGGTTTATCAGCTTCATCATCCTTTGTACCACATAGATTTTTATAATTCTCATGAATCTTCATCTTTAATACTGAAAAGACAAATTTCTAGACAAGAGTTTGACATTGTGGAGTGTAATCTTCCAACAAAGAAGGATGGTACACCACAGATCAAAAGTTTACTTACTACCAACAAATCTAACAACACAAATTCAGTGGCAGTCGGTTGTCAAAATAAAGTCATAGCTGTAGTTAACAGAAATGTCTTAGTTGTACATAACAAGAAGAAAACAATCAGACATATTATGGAAGGATTAGACGGAACACATTTTACGTGTGTAGCTTGTCATCCTACAGATTTATGTGTAGTAACTGGATGTCAAAATGGACGTATATATTACTGGTATAATATATTTAATAAAGATAAAGTGACAAAGACGTATTATCACTGGCATGCTTTACCTGTATTAGATCTCTGTTTTACTGCAGAAGGTTCCTACTTATTAAGTGGAGGATATGAATGTGTGTTGGTAAAATGGCAGTACAATTCAAATCTAAAAGACTTTCTGCCAAGACTTGGAGCTCCAATTAATCATGTGACCTGTTCCCGTGACAACCTTTTCTATGCAACATGTCATACAGACAATGTGATCCAGTTAATAAACAACAATTTTGAATTAAAACAAGTTTATCAAGGATTGACATGTGGACACCATGAAACACAGAAGACACACCCTGTACCTGCCGGTCTTCATTATGACCCAAGGTCAAAGGCCTTAGTAACCAATGGCAAGATAGGACACTTACAATTCTACTCTCTAGCCAATGACAAGCATCTTTATAATTTGGATATTGTCAGTCAAAATTATGTATCACCTGAGAATTTGGATAAACAAATGACAGTGACTGAAATTATTGCTGCAGACTTCAGTTCCCATGGAGACTGGCTTTCTACAGTTGAAATGTGGGATGACAAAGTTATGTCACCTGAAATGAGATTGAAGTTCTGGAAATTCAAAGAAGAAACGCAAAGTTACACCTTAAACACAACAGTAGAGATGCCACACAATAAAGCAGTAACCTGTGTAAGGATAAGACCAGAAACAGGAGAAGATGATGACCAACCAATGGTTGTTACAACAAGTCAAGATGGCTACTTTAAAACATGGACATTAGTTGATGATAGTAACATATATAGACAGAATACAAAATGGAACTGTACATTCTCTGGTTACTATCGAGGTCAGACAGCCAACATAGCTTCTTATTCTGAGGATGGATCGTTACTATGTGTAGGATTTGGTCCAGTTCTTACTATCTGGGATCCTGATACTAATGTCCTGTTACAGACGTTAGCCAACTATAAAGATAAATCAGATATAAAATTTATTGAGTTTGGGAAATATGGTTGTTCTCATTTGTTGGTTGTGTGTAGCAAAGAAGGTTTAACAACATGGAATTTATCAACATGTACAGTTGTATGGAGTGTAGAGATAGAGTCTGTCTGCTTAGTACCTGACCCTGAGACAGATGTCATGGCAGTCATCTCACAACATAATAATGTGTATTTCTTTAGACCCTCTAGTCCAGATATGTTATATAAACATGATATGATTAGTTCGACAAGAGTTGCCAGTGCTATATTTATACCACAGACCTCAAACATGCAAGGGAGACAATTACCTACAAATTCCAAACTTTATTTTATCAACTGTAAACACCAGTTACTATGCTTATCTGAAGTGGACTCTACACAAACTACACAGAAAAATAAGATGACGATCACATCAAACCTTCCAAAGACAGCCTTAAGTTCTATTTTGTCTAAAGAGACTAGTAAACAGCCAATATTGGAATCACACAGTTCATCAAAGGATGTCAAATCATGGAAAGAGTTCTTGGATACACCACCACAAGTACAACCTGCAGTTACTTCCCTTTGTCAACAATTCATACAGTCAATGCTTGTCAAGTCAGGAGCTGAAAGTGTGGACGACATTGAAGAAGATGCGGAATCATCCGATGTGGAATCTGTGATGGAAGTGGATCAAGATTCAGATTCTGAAGATGAAAAAGTTCCTGTTAAACAAACTTCTACGAAAACCAGAAAGTCAGAACCTGAAAACCTGAAGACTAAATCAGAAATACAGAAAGATAAATCACAGACTGTTAAACAGACAGACAGTAAATCACAAACAGTGACAGACGATATTATTCTAAATATTAATGATATGGATTGGTATAGAAAAAAGATTCATTAA

Transcript

Bpl_scaf_30846-0.11

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44215	WD REPEAT-CONTAINING PROTEIN 75	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan
GO:2000234	Biological Process	positive regulation of rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14552	NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)	-	Ribosome biogenesis in eukaryotes	ko03008	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_30846-0.11 global RNA-seq network