Detailed information of Bpl_scaf_30472-3.16 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_30472-3.16NETRIN/LAMININ-RELATEDBpl_scaf_30472251961351682-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00047igImmunoglobulin domainDomainInterproscan
PF00052Laminin_BLaminin B (Domain IV)DomainInterproscan
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000034DomainLaminin IVInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR002049DomainLaminin-type EGF domainInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR013106DomainImmunoglobulin V-set domainInterproscan
IPR013151DomainImmunoglobulinInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR050440FamilyLaminin/Netrin Extracellular MatrixInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10574NETRIN/LAMININ-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0001738Biological Processmorphogenesis of a polarized epitheliumInterproscan
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005604Cellular Componentbasement membraneInterproscan
GO:0005610Cellular Componentlaminin-5 complexInterproscan
GO:0009887Biological Processanimal organ morphogenesisInterproscan
GO:0009888Biological Processtissue developmentInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06255HSPG2; heparan sulfate proteoglycan 2 (perlecan)-ECM-receptor interaction ko04512PMID: 28812709
Proteoglycans in cancer ko05205PMID: 28812709
Hepatitis B ko05161PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_30472-3.16 global RNA-seq network
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