Gene detail

Detailed information of Bpl_scaf_30366-8.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_30366-8.13	LIM DOMAIN-BINDING PROTEIN	Bpl_scaf_30366	777209	796539	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_30366-8.13

ATTTGACAACAAATGCTTAGTGATTTAGGTCCTGAGCAGATAAATAATTTCCTCTGGACAACCTCACAGTACTAACATTCCACCATCTTCATATACTAATACACTATTGTTTTATAAAGGGGCACCTGTTGTCCTGGTTTAATTTAATTATAGACACTGATATACACATGAATGGGAAGATAGTGTTTCTACTTTACTTTTTTTCAAGGATTGGTACGAGAGATAAACCACTTTTGTAGATAATTGTTTGTACAAATTATGTGGGAAATTGTGACAGGGGATCAGAATGAACTGTTTAAACTATGATCCATTTTATTCATCTCCGTTTTCTATGTTATACAGAAGACATACTCCATACATGGGACAGCCTGATTACAGAATCCATGAACTCAACAAAAGACTGCAACAACGAAGTGAGGAAAGTGATATTCTATGGTGGGAATCATTTGCTACAGAGTTCTTTGAAGACGATGCCAATTTGACCCTTTCATTTTATTTAGAAGATGGACCCAAACGTTACACGATTGGTAGGACACTGATCCCACGGTACTTCAGAAGTATTTTTGAAGGAGGAGTAACAGATTTGTATTATATACTAAAACACACTAAAGAATCGTTTCACAACACATCAATCACTCTAGATTGTGACCATGCTACCATGGTAACACATCATGGTAAACCCATGTTTACAAAGGTTGTAACAGAAGGCAGACTAATTTTAGAGTTCACATTTGATGACTTGATGAGAATTAGATCATGGCATTTCCAAGTACGACAGCACCGAGAGCTCATACCAAGAAGTGTTATTGCAATGCAGGACCCATCAATGGTTGAACAGCTGTCAAAGAATATAACACGTCAAGGATTGACTAACTACACACTCAACTTCTTACGTCTCTGTGTAATCTTAGAACCGATGCAGGAGCTGATGTCTCGACATAAAGCTTATGGTTTAAATCCTAGGGACTGTCTCAAAACTACACTGTTTCAAAAATGGCAGAGAATGGTAGCTCCACCGGGAAAGGGCAAACAAGAACCAGCTAGACAGCCTGGAAAAAGACGAAAAAGAAAATCATCAACAGGAAATGCTACTGGTAATCTTAACAGTGCTGGAGGACCAGCAAAGAAAAGATCTCCTGGTCCACAAGGCATTGGTGCTTCTGTACCTGGGGATGTGATGGTAGTTGGAGAACCAACTTTAATGGGAGGTGAATTTGGTGATGAAGATGAACGATTAATTACACGATTAGAAAATTCACAATTTGAAACGAGCAACCCAGAAGAAGACAGTAAAGACTTTCAAAATTCACCATCCGTCGCCCATAGTCCCTGGGGTCAGGACAAGAAGACCCCTACAGGCAGCAGTACCCCTGGTTCCAGTATACCTCCCCCAACAAATCAACAAAATCAAGCGGAAGAAGGCAAAATTGAATGAGTTGATGAAATAACATAACTTGGGGATTTTGATCAATATTTACGCAAAATTGAATAGGATGTGAAAAGTTTGATAAATTTATGATCAGTCTATTATATTGAAAAATTTTCAAAAAATTGTATATTCAACTTTGTAAATTTGATTTTGTGGGTGCAAATATTTATGGTTTACAGAAATAATGAAGTTATTATTTTATTAGGGAGAATTTATCAATTCATGTATATTTTATATTACACTGAGCATCTGTAGTAATGGGGTTTCCATGGAAACATATATCAAATAAATTGAAGGACCCCATGCCTAAAAAAAAATTCAGGTAGATCAATCAAAAACTATGAAGAAAAGTCAATTGTCGTTATGGTTTTTTTTTTTCTCATAATGAGGACAACATTGCTGTACTAAACTGTCTTATAATGCACTGTAGTTGATTGGAATGCTCATGGAAAATAACTTTTTTCCCTAGCAAAGATTAATGGTTTCTATAGGAGAAAAAAAATATGTATTCAATTTGGTATTATTGAAAAGAACAATACACAGGTGATTGTAATAAGAAGAAATCAATAACACTGACTACATGTATACCCAGTCTTCACACTAACCCACTTGCTCGAATACCGGGACAAGTAAATCTTAATTCGAACAAGCGAAAATTGTGAAAGAATTTGTTTGAATAAACAGACAAATTTTCTAAATTTGGCTTTCGGGCAAGTAGGTGTAAAAAATTAAGACAAAGACTGTATACCAACATAATGAAATGTAATCATTTATGATTTAAGTGTATTGTATAAATACTACGGGTAAGCCTGTCTTGAGAAGGTTTTCTATGTTTTGTCAGACCACATCCATGTCAAAAGTCTTCATTATACATGTTCATTATCAAACCTCTAATGAGGGGTCACTTTTGGTCAAAAAGTTGTTTTTATGGTTATTGGGTGGTTATTTATAGGACAGGTTTAACTGTATTTAATAAAAACCTTATAGGTTTTTCAAATTTATGATCTGATATTCTAGGTCTATATTTTTCTTTTTTGTCTCTCTTTATTCTATTTATAGATCTGACTCAATCATATCATGTTTTGTTATGTAATTTGTCTATTTATATCGTAACCATTTTATGTGTAGAGGTAGTGGTCATTATTATATTTTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01803	LIM_bind	LIM-domain binding protein	Family	Interproscan
PF17916	LID	LIM interaction domain (LID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029005	Family	LIM-domain binding protein/SEUSS	Interproscan
IPR041363	Domain	LIM interaction domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10378	LIM DOMAIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0007399	Biological Process	nervous system development	Interproscan
GO:0030274	Molecular Function	LIM domain binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15617	LDB1; LIM domain-binding protein 1	-	Transcriptional misregulation in cancers	ko05202	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_30366-8.13 global RNA-seq network