Gene detail

Detailed information of Bpl_scaf_30366-11.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_30366-11.9	CELL DIVISION CYCLE 16,23,27	Bpl_scaf_30366	1142890	1173844	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_30366-11.9

ATGGACCTGAGTATAGTGGTTGAAGACCAGCGCTCAGAAGAGGATCTGGCAGCAGAATTATCATCAGCCATTGATGTACAAGTTGACTATCAACAGATAGTGCCTGTCCAGGAGCGTAAGGATTTCTATGAGGAATATGATAAATATGCTTTAGCCTCCAGTTATTTTGACTTAAAGGAATATGACAGAGCTGTATATTTTCTACAAGACTGCAACAGTTCTAAGAATTATTTCCTCCATATGTATGGACGCTATTTAGCTGATGAAAAGAGAAAAGTTGACAATGCTTCTGATTCTATAGGTCCCCCAGATCACCTAGAAAATGAGCATCTGAAAACATTAAAGATAGAAATGAATAGAAAGTACATTATGAAGGAACTGGATGGATTCTGTTTGTATTTATATGGAATAGTGTTAAAGAAATTAGATTTACTAAAAGAAGGTCTTGAGATGTTAGTTGAAGCAGTAAATTATGAACCGTTACATTGGGGAGCATGGTTAGAGTTAGCTGTTTTAATACCTGATAAAGAAACTTTGATGTCATTATCATTGCCTAATCACTGGATGAAGAATTTATTTTTAGGACATATGTACTTAGAATTACAATTAAATGAAGAAGCATTAAAAATTTATCAGAATCTCGTAGATGGTGGATTTTCTAAGAGTACTTACATTGTTTCACAAATGGCTGTTGTTTATCACAACATGAGAGAGATAGATATGGCTGTGACAGCTTTTGCTGAATTACAAGAACTGGACCCATATAGGCTAGAAAACATGGATACTTACTCTAATTTACTCTACATAAAGGAAATGAGAGCAGACCTGGCACATTTAGCTCACAGATGTTGTGATATAGATAAATACAGAGTGGAAACATGCTGTGTTATAGGAAATTATTATTCATTGAGACAACAACATGAAAAGGCAGTTATGTATTTCCAGAGAGCATTAAAACTAAACCCATATTATTTATCAGCCTGGACGTTAATGGGTCATGAGTTTATGGAATTAAAAAATACATCAGCAGCACTACAGGCATATAGACAAGCTATAGAGGTTAACAGAAGAGATTATAGAGCTTGGTATGGATTAGGACAAACTTATGAAATATTAAAGATGTATCACTATTGTTTATATTACTACAGACAAGCTCAACAATTAAGACCCAATGATTCTAGGATGGTTGTAGCTTTAGGAGAATCCTACGAGAAGCTAGAAAGACTACAAGAAGCTAAGAAATGTTTCAGAAAAGCCCACAGTATTGGAGATCTCGAAGGAACAGCCATAATTAAATTAGCAAAACTTCATGAAAGGTTAGGTGAAGAGACACATGCTGCAGCTGCCTACACAGAATATGTTAATGATGCCAACAGACAGGGTATATTTAACCCAGAAGATTTAAGTCAAGCATACAAATATCTAGCTAACTATCACCTTGGACAAGGTCAGTTAGATGAAGCTTATGCTGCTGCACAGAAATGTACAGAATTCCAAGAGACAAGAGAAGAGGCCAAAGTGATTCTACGTCATATACAGGATTTACGTTCCAAGAAAGAAATAATTGCAGACAGTAGAATGGACGATAGTTGTGGGTCTATTACAACAGAGAGATTCCACGGAGCTGATCATACACCAATTAGTTCATTATCACCAGTTAATCTTAGATTTACACCTGGAGATTCTTGTTAATGTTGTAGTCAAACTTGTAAGGAGCAGTCACCATTGGGACAAAAGAAAAATTACAGCATAAAACAATCGACTGTTTATTTAAGATCTGTCTATTAACATTGTCAGTTCTGGTCTGAAATGTTTCTTGTATTACTGAAAGTAATATATTGGAAAACATGTCAGTTTCTATATAATGCTCCCGTGATTTTGTAGCGATTGACAGTTAATTATTCAATAATTTGATGGCTTAATTGGTACAATCATCTACTAAGATCACCTCGAAAATTAATTAACGATATGATCATGATGGGATAAATTGATCGCTTATATGAGTTAAAATAACACGTAATTCTGTTCCCGGAAATTTGAAAACTGACTTTTCACAGCAGGTGATAGCTAATTCAAGGTGACTTTTTAAGTTTGACTGTACACCGCATATTACTTTATGCATGAGTTATGTTTAAAAATAAACATTTAAAAGATATAACAGAAATAAATAAAGCTGAAAATCTCATAAAAGTTGTTCTCACCACGATATAGCTGAAATATTGCTAAAGTTGGCAATTAACACCAATCAATCATAAAAATCTCAATCTAAAGAGCTTAGTAGATTAAGGTAGATAAATGATCCATATTTGACCTCAGAAATAGACAAGATCACATGTATTGATGTGCCATTTGAACCATTGTTTATCACTTTTAACTCCTTTGTTTTCTGTAAACTGAAGACACGTACGGACAGATATTAAAATGTAAGAATAATAACCAGATGGTTATTTCAGAAGATTGTGTTTCCAGTTATCTTTATTAAACCAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04049	ANAPC8	Anaphase promoting complex subunit 8 / Cdc23	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13414	TPR_11	TPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007192	Domain	Cdc23	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12558	CELL DIVISION CYCLE 16,23,27	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005680	Cellular Component	anaphase-promoting complex	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031145	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0045842	Biological Process	positive regulation of mitotic metaphase/anaphase transition	Interproscan
GO:0051301	Biological Process	cell division	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03355	APC8, CDC23; anaphase-promoting complex subunit 8	-	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709
			Cell cycle	ko04110	PMID: 28812709
			Cell cycle - yeast	ko04111	PMID: 28812709
			Meiosis - yeast	ko04113	PMID: 28812709
			Oocyte meiosis	ko04114	PMID: 28812709
			Progesterone-mediated oocyte maturation	ko04914	PMID: 28812709
			HTLV-I infection	ko05166	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_30366-11.9 global RNA-seq network