Gene detail

Detailed information of Bpl_scaf_30291-14.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_30291-14.7	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Bpl_scaf_30291	1444958	1474439	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_30291-14.7

ATGGACTTTGCTGACAAAACTTTTCCATATCAGTTGTATAACCATGACAAAATTTGGAACAAAAGGAATTTCCTTGCACCATGCTGTTCCTATGACACAAAAAGGAAATTGTTCGCATCATGCGGTTCCCATGACAATATTGATGTGGATAATGTAACAGAAAAAAAGTTTTATCCTCAGAAAATCCCAGAAGGTTTTGTTAACAAGAGAACTAGTTTGAAAGCGAGAAGACCAGCTCTTCCTTTACATGAAGACCCAGAACAAGTGACGTATCCATTAGTAGACAGAGTCACTGATCCAATTACTGAAGAGAAGAAAGAATTAACAAGCCTGTTATATAATCTTAAGTTTAACAGAGGCATTTTAAAAACAAAACCAGGTAATAAAACAACAAGATACTTAAGTTATGGATGTTTCAATGAACTGAAGAATAAACTAGATGACCTTGGCATTGAGGAGGATGTCCCTGACAGTGAGGCCATGACATTTCTTCATCCAAAATTCCATTATTTGATCTCATTATATCAGAAGTATAAATCATGTACAGAAATTAAGAAAGTGAATTCTAGATATGCTGATGGCTGTTTAGGTTATCTCCCTTTAAAGTCAGCTAAATCAGCAGGATGTTTAATAAAACCAGTTGAAGATTTCCGTAAATTAAAAATATCATGTTTAACATATGACGACAAAGAAGATGTGAAGGTTGATACCACTTGTTCTATAAATACTGATGATGAAATATATGGAGTTACAGCATGTTACAGCAGAGATAAAGGCTATATTTTAACCAGACATGCCTCTAGCTGCCAGATGTATAGCTTGGGAGAAGATTGTAATCCAGAAATTGTACAGAAATTAAAAGTAAAAGGTGCTCCGCTGACTTCGCAATGCATGAGTCCATACATCCCAGGTGAAAGTTTGATAGCAACAGATAATGGGTCTGTGTACTTGTGGTCTTTAGGTAATAGAAAAAAAAAAGTTATAAGACAGAAAGAGCAGAGATTTTATTGTCGTGACCAGTGGAGACAAGCTATATTTAGCAGCCACCCACGACAAATTATTTTAGCTGATTGTACAGCTGTAGAATTGTTTGATTTAAGGACGGAACAGACCAATGGAACAGATTTGTTTGCCTTACCAAGTAAATTACTTCATCCCAATGAGAGAATCAGAATAATTAAACAACTTACGCCATTCATGTATGTAATTGGTACTGATTACTCCCTGATTGTTACAGATGAAAGGTTCCCTGGACATCCTCTTTTACAATGGCAGCACATGCTAAGATATCCACCACAGTATCTATCAGTGTTGTCTGATGTAGGCACTCAAAGTCAGAGCCTCATTTCCATTGCTAGTCAGAATCCTATGGAAGCTTATTGTCATATGTTACAAGGAGGAATTCATAAAACAGTTCAAGGGCTTGGATCACCATGGAAATTAGCCAGACCTGATGACATAACCAAATGGGATGAGATGTGTAACAGTACCGATGGAATAGCAGTGGAACATAGATATAATAGAGATTCTTTGTTAGGACTACAATGTGTCAATCTCCGTAATGGATTTGTGGCATATCAGCTAGATAGTCATGGGGATATTTACTATCAAGTATTCCAGTCATCCAATCAGGAGGGTGATAAAACATTTGCTGCAGGACCGGGAATGAATAGCCTTCAACTTGATGATGTAACTAAGGAGAAAGGGAAAAAATGGATTCAAGCTTTAAATGATACATGGAACAAATCGGATGGAGATGAAGAAAAACATGTACCTGTTGCAGACATTAAAGAATATTTTGAAGAAATTATTCTTGAGAAACCATCCCATGTATTGTGTTCACTTTGTCATAATAGAGAGGATGCAGATGTCAAATCTGGTGATGAAACCAAGGGAGATAATAGTAACGACAACAGGGGAGTGAACTCTGACGATATTTGTTTTTGCTGCAGACAGCATCTGAGAATAGGGAAAACAATAGCTGATGGTGCAACTAATGACAGAGTATGTAGTGTTTCTACCCAAGAACTTGTTTCTCTTCCACTTGTGTCCTCTCTACCATCAGATATTCTCAGTCAGATGATTACCAGACTATGGAATGAAGAAGATGTTGATGACTTGTTACCACAGAGAGATGTAGAAGTGGATAAGAAACTGGAGAAGCGTAAAGAAAAGAAGAAATTAGAAAAAAATGAGATTACTGATGTATTACTTCAAGGATTACCTCAAGAAATAATAGAATTGATGGAAAAAAGTAACACTTGTTATGGCAATGAAATCAATACAAACAAAACTTCAGATATGGACTTTGATGAAAGTGACATCAGTCAGACTTCAGATCATATAGATAACATCATAGCTGATGTAGCACGGTGTCAATCTGTAGACGAAACTGATCATACAAGGAATTCTTCTGATTTAAATACATCAGGTACTTCAGTTATAAAGGAGGCAATTAAAGACCTCACCCCAAAGAGACAGACAGATTCGTTCACTGTTACTAGAGAAGATGTACTTTCAAATTTAAGATCCCAGAGACAGAGACATTCTTCAATTTCAAGTGTGTCGACTAATAAAAGTTCATGTAGTGGTATATCCACATTATCTGGTTTCCTGCCAGGGTTCATGAGGACACCAGAGAGGAAATTCAGATCTTCAATCAAAAAGCGAGCAGTTTCAGAAGATAAATCTGATATAACTGATATTGATTTAATGGATGAACAGTTTTTATCTCAAGAATCAAGAAAAAGTGTTCAGATGTTTACAAACATTTCCCCAAGCTTTCAAGATAATCAAAATTCACAGAGAAAAAGGAACAAAGTTGATTCACCGAGAAAAAGGAACAAAATTGATTCAGACTCAGAATCAAGCCAGTCATTATTTAGAACTCCAAATATCTTGTCCCCTAAAAAAACAAAAATTAAAAAGAATTTTGTTCCTGGATTTTGA

Transcript

Bpl_scaf_30291-14.7

ATTTTTAATGGCGGCACCCATCTAAATTCTATGATCTCCCTTGAATTTTTGTAGCACTGCTATTTATAGATTTATCCATGGACTTTGCTGACAAAACTTTTCCATATCAGTTGTATAACCATGACAAAATTTGGAACAAAAGGAATTTCCTTGCACCATGCTGTTCCTATGACACAAAAAGGAAATTGTTCGCATCATGCGGTTCCCATGACAATATTGATGTGGATAATGTAACAGAAAAAAAGTTTTATCCTCAGAAAATCCCAGAAGGTTTTGTTAACAAGAGAACTAGTTTGAAAGCGAGAAGACCAGCTCTTCCTTTACATGAAGACCCAGAACAAGTGACGTATCCATTAGTAGACAGAGTCACTGATCCAATTACTGAAGAGAAGAAAGAATTAACAAGCCTGTTATATAATCTTAAGTTTAACAGAGGCATTTTAAAAACAAAACCAGGTAATAAAACAACAAGATACTTAAGTTATGGATGTTTCAATGAACTGAAGAATAAACTAGATGACCTTGGCATTGAGGAGGATGTCCCTGACAGTGAGGCCATGACATTTCTTCATCCAAAATTCCATTATTTGATCTCATTATATCAGAAGTATAAATCATGTACAGAAATTAAGAAAGTGAATTCTAGATATGCTGATGGCTGTTTAGGTTATCTCCCTTTAAAGTCAGCTAAATCAGCAGGATGTTTAATAAAACCAGTTGAAGATTTCCGTAAATTAAAAATATCATGTTTAACATATGACGACAAAGAAGATGTGAAGGTTGATACCACTTGTTCTATAAATACTGATGATGAAATATATGGAGTTACAGCATGTTACAGCAGAGATAAAGGCTATATTTTAACCAGACATGCCTCTAGCTGCCAGATGTATAGCTTGGGAGAAGATTGTAATCCAGAAATTGTACAGAAATTAAAAGTAAAAGGTGCTCCGCTGACTTCGCAATGCATGAGTCCATACATCCCAGGTGAAAGTTTGATAGCAACAGATAATGGGTCTGTGTACTTGTGGTCTTTAGGTAATAGAAAAAAAAAAGTTATAAGACAGAAAGAGCAGAGATTTTATTGTCGTGACCAGTGGAGACAAGCTATATTTAGCAGCCACCCACGACAAATTATTTTAGCTGATTGTACAGCTGTAGAATTGTTTGATTTAAGGACGGAACAGACCAATGGAACAGATTTGTTTGCCTTACCAAGTAAATTACTTCATCCCAATGAGAGAATCAGAATAATTAAACAACTTACGCCATTCATGTATGTAATTGGTACTGATTACTCCCTGATTGTTACAGATGAAAGGTTCCCTGGACATCCTCTTTTACAATGGCAGCACATGCTAAGATATCCACCACAGTATCTATCAGTGTTGTCTGATGTAGGCACTCAAAGTCAGAGCCTCATTTCCATTGCTAGTCAGAATCCTATGGAAGCTTATTGTCATATGTTACAAGGAGGAATTCATAAAACAGTTCAAGGGCTTGGATCACCATGGAAATTAGCCAGACCTGATGACATAACCAAATGGGATGAGATGTGTAACAGTACCGATGGAATAGCAGTGGAACATAGATATAATAGAGATTCTTTGTTAGGACTACAATGTGTCAATCTCCGTAATGGATTTGTGGCATATCAGCTAGATAGTCATGGGGATATTTACTATCAAGTATTCCAGTCATCCAATCAGGAGGGTGATAAAACATTTGCTGCAGGACCGGGAATGAATAGCCTTCAACTTGATGATGTAACTAAGGAGAAAGGGAAAAAATGGATTCAAGCTTTAAATGATACATGGAACAAATCGGATGGAGATGAAGAAAAACATGTACCTGTTGCAGACATTAAAGAATATTTTGAAGAAATTATTCTTGAGAAACCATCCCATGTATTGTGTTCACTTTGTCATAATAGAGAGGATGCAGATGTCAAATCTGGTGATGAAACCAAGGGAGATAATAGTAACGACAACAGGGGAGTGAACTCTGACGATATTTGTTTTTGCTGCAGACAGCATCTGAGAATAGGGAAAACAATAGCTGATGGTGCAACTAATGACAGAGTATGTAGTGTTTCTACCCAAGAACTTGTTTCTCTTCCACTTGTGTCCTCTCTACCATCAGATATTCTCAGTCAGATGATTACCAGACTATGGAATGAAGAAGATGTTGATGACTTGTTACCACAGAGAGATGTAGAAGTGGATAAGAAACTGGAGAAGCGTAAAGAAAAGAAGAAATTAGAAAAAAATGAGATTACTGATGTATTACTTCAAGGATTACCTCAAGAAATAATAGAATTGATGGAAAAAAGTAACACTTGTTATGGCAATGAAATCAATACAAACAAAACTTCAGATATGGACTTTGATGAAAGTGACATCAGTCAGACTTCAGATCATATAGATAACATCATAGCTGATGTAGCACGGTGTCAATCTGTAGACGAAACTGATCATACAAGGAATTCTTCTGATTTAAATACATCAGGTACTTCAGTTATAAAGGAGGCAATTAAAGACCTCACCCCAAAGAGACAGACAGATTCGTTCACTGTTACTAGAGAAGATGTACTTTCAAATTTAAGATCCCAGAGACAGAGACATTCTTCAATTTCAAGTGTGTCGACTAATAAAAGTTCATGTAGTGGTATATCCACATTATCTGGTTTCCTGCCAGGGTTCATGAGGACACCAGAGAGGAAATTCAGATCTTCAATCAAAAAGCGAGCAGTTTCAGAAGATAAATCTGATATAACTGATATTGATTTAATGGATGAACAGTTTTTATCTCAAGAATCAAGAAAAAGTGTTCAGATGTTTACAAACATTTCCCCAAGCTTTCAAGATAATCAAAATTCACAGAGAAAAAGGAACAAAGTTGATTCACCGAGAAAAAGGAACAAAATTGATTCAGACTCAGAATCAAGCCAGTCATTATTTAGAACTCCAAATATCTTGTCCCCTAAAAAAACAAAAATTAAAAAGAATTTTGTTCCTGGATTTTGAATACATTGACTTCATTTATGCAATATTTCATATCTGAAAAATAAAGAATTAACACTGTTGAGTGGAATTTTCAGACCTTTAAATAAAATATTTAACACATTCTTTTACCCTTCCAGGATCCACTTGAATACATACATTGTGTCATGTTTGTCACATGCTTGATATGATTTTAATGATTATTTACTGTGTCTGTATTATCTGAAAATGAGCTTATAGTATCACTTGGTGTCCATCATACGTTGTCTGTCGTCATTCTTCTTTTCACATTTTTAGCTTACCTGACCAAAGGCCATGTGAGCTTTTGCCATCAGGTTTCGTCCGTCGTTGTCGTCTGTCGTAAACTTTTCACATTTTAATCTTCTCCCCAGAAACCACCGAGCCTATTTAGACCAAACTTTGGTGGAATGGTCCTTGGATGGCCCCCTTCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20641	TAF1C_beta-prop	TAF1C, beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR038801	Family	TATA box-binding protein-associated factor RNA polymerase I subunit C	Interproscan
IPR049087	Domain	TAF1C, beta-propeller domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15319	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001164	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001650	Cellular Component	fibrillar center	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15214	TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_30291-14.7 global RNA-seq network