| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_30175-7.5 | COLD SHOCK DOMAIN CONTAINING PROTEINS | Bpl_scaf_30175 | 789948 | 803666 | + |
| CDS | |||||
| Bpl_scaf_30175-7.5 | |||||
| Transcript |
| Bpl_scaf_30175-7.5 |
| Protein |
| Bpl_scaf_30175-7.5 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | CSD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00313 | CSD | 'Cold-shock' DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002059 | Domain | Cold-shock protein, DNA-binding | Interproscan |
| IPR011129 | Domain | Cold shock domain | Interproscan |
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR019844 | Domain | Cold-shock (CSD) domain | Interproscan |
| IPR050181 | Family | Cold shock domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11544 | COLD SHOCK DOMAIN CONTAINING PROTEINS | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0010468 | Biological Process | regulation of gene expression | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K09276 | YBX1, NSEP1; Y-box-binding protein 1 | - | Transcription factors | ko03000 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_30175-7.5 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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