Gene detail

Detailed information of Bpl_scaf_2971-1.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_2971-1.18	UBIQUITIN-ACTIVATING ENZYME E1	Bpl_scaf_2971	111129	145855	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_2971-1.18

CTGGGCAACGATACTGGAAATGCTAATATATTTTTAGTTGCCATTGAGAGGATTTTGAATGACAGATAATTTATCATAATACTGACTTATATTTTGAGATATGTTTTTTGAATAAATACACAATTTCCAATTGCTTTCAAAACAACATGTGACGTCTGGTTATCTTTTTTCTTACCAATCTTAACTCTCGGCAAGTTTCGCGTTTCCCTCCCCGTGAAATAATACTCCCTGGAAATATTAGAATCATTTCAACATCCCCTGTTTCAACAGAATTCGGATGACACTTACAGAATACAGAATTCAGACCTAAAACTCAAAACAAATCTGATGGAGTCTGATTGGTCAGGACGATGGAACCATGTTAGAAAATTTGTTGAAAGAGGAGGACCCTTTGCACATCCTGATTTTGAACCAAGCACAGAAGCTTTAGGATTTTTACATGATGTATGTAAGATACTGATTATTGGTGCTGGAGGATTGGGATGTGAACTTCTCAAAGATTTGGCATTCATGGGATTTAGAAATCTAGATGTTATTGACATGGACACCATTGATGTTTCTAATTTAAACAGACAATTTTTATTCAGGAGTAAAGATGTAGGAAAACCCAAAGCTGATGTTGCAGCAGAATTTATCAACAAAAGAGTGCCTGGATGTAAAGTTACCCCTCATTATTGTAAAATCCAAGATTTTGATGAATCATTTTATAGACAATTTCACATTGTAGTTAGTGGTTTAGATTCTATTGTAGCTAGGCGATGGATTAATGGAATGTTGATAAGTCTGTTGAAGTATGAAGATGGAGAACTAGATCAAAGTACTGTAATACCTATGGTGGATGGAGGCACCGAGGGGTTTAAAGGAAATGCCAGAGTTATCCTCCCTGGTATCACAGCTTGTATAGAATGTACACTAGATTTATACCCTCCACAGATAAATTTCCCATTATGTACAATAGCACACACTCCACGACTTCCAGAACATTGTATTGAATATGTCAGAATATTACTCTGGCCTAAAGAAGAGCCCTTTGGAGGTAAACTTCATATAGGATATTGGTTGTGTCAGAAAATGAACAAATAAATTCCAACAACAGCTAATTTTAGTAAGATTATATAAATATATTTTTACATCAATTTGTTATTGTACTATTTTTTAACATGTCAGATAAATTTATTTCAGCTGCTTGTTCTACAGAAATATTTAAACTAGCTACAAGTTGTTGTTTGCCCCTGAATAACTATATGAATTTCAGTGATATAGATGGTATATATACTTATGCATTTGAAGCAATGAAAAAGGAAGATTGTATAGCTTGTACCAATATACCAAAGACATTAAAATTCTCTGATGGTGACAAGCTACAAGATATATTAACATATTTAATAGACAGCCAAGAATTTCAGATGAAATCTCCAGGAATTACAACCTCTTTAAATGGCAAAAATAAAACATTATACATGCAGACAGTAAAGTCAATAGAGGAAAAAACTAGACAAAATCTGAAGAAGACATTAAATGAGCTTGGTTTACACGATGGACAAGAAGTTTATATAGCAGATCCTACCACTCCAAATACAATTACATTTAAACTGACTTTAGGATGTAATATGGAATAATTTACATTCAATATCATAACTCAAAAGTTTAATGTAGTACAGTGGAACTTACGACACCTAAGTATTCCGACGTCCTGTGACATCCAACCAAAATTTATAGTCCCATAGTATTTCTGTTAACCAAAATAAAACCAGAGTATTCCGATATCCTGTACAATCCTTACACATTTCCCTGGTCCCTTGGTGTGTCGGATTAGACAAGTTCAACGGTACTAGTAATGTAATACTAGTAATGTTTATCATTTGTCACTAAATATGTTCATTCTGGTAGATATTTGATCATACCTTAATGTCAGAACTATTACAAGGGTCAACATTAACATTTTTATCAACTTGTCCATTCGGACTAGTAGCCCGAAGTTTTAGTTGTCAGACAGCATGAAAAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E1\|ThiF\|ThiF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00899	ThiF	ThiF family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000594	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR033127	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan
IPR035985	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR045886	Family	ThiF/MoeB/HesA family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008641	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0019781	Molecular Function	NEDD8 activating enzyme activity	Interproscan
GO:0032446	Biological Process	protein modification by small protein conjugation	Interproscan
GO:0045116	Biological Process	protein neddylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10686	UBE1C, UBA3; ubiquitin-activating enzyme E1 C	EC:6.2.1.45	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_2971-1.18 global RNA-seq network