Gene detail

Detailed information of Bpl_scaf_29371-0.30 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_29371-0.30	ADDITIONAL SEX COMBS LIKE PROTEIN ASXL	Bpl_scaf_29371	90172	119201	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_29371-0.30

ATGATGCAGGCAGATCCAACTAAAGACAAACAAGCAAAAAAGAAGAAAAGTAGGACATGGATAGAAGCTGCGAAAATCGTTTTAGAAAGTAAACCACAGACTCCCATGAACTGTAAAACAATTTTACAAAAGATAAAAGATGAAAATTTAAAGGACATCAGTGGTTCAGTGCCTTTGGCTTGTCTGAATTCCTGTCTTGACATTAACTCTAGAGGCAATGACAGTGTGTTTTATAAAGTATATGGGAGGTCTGATGTGTATGGACTGAGGAATGACATACCCAATGGATCAGAGATTATTGAAGTTAAAGAAGAAGATGAAGATAAGAAGGAAGAGCCAGAAGAGATCATTTCAGTAGATACGTCACCAGATGTTAAAGTTGCTCTGTCGATTACTCAAAATGGAGGTCAAAATTCAGACGATTCTGAAACGGATTCATCACAACCTCAAAAACCTCAGACAATGAAAGAAATCCTTGCAGGTCTACCTGGCTTTAGTATGAAGCCACGGAAGAGAAATAAGAAGTTAAGTCATGCTGCTCAGATAGCTCAGACTAAAGAAGGATGTATTGATCTGGAAACTCCTGATTCTATCTTAGTAACAACCAATCTGAGGGTAAATAAATACAGGAGAATCAAACATGAGGTTCCTAAAGCAGATATGCCTTCACCAACTTCAGAAGTCCATCCAGTTGTCAGCAGAAAACCACAGATTAAAAAGGCTACAATAGTGGCGAACATGTTAAAACAGAGATCAATATTTCAGACTGTTAATAGATTTAAAGACAATCACGATTCACCGGGAGGACTATTGTTAAAGGTTGTACATAAAGATCATACAAAACATGAACCTCATGGTATTAAAAGATCTGTGCCGCTATCAATAAAGCAGATGGATGACATTACTATTGTTAGTCCTCTGAAAAAGCCAAGAACTCCTCCTCTTCCTCCTCCACCTCCTTCACAGCCTCAATCACAGAATATAGGAACATTTAGTCAACCGATTGTAATAACAGAAGTTTCTGATGCCATAGTGTCTAAACCACAAGTTTCTCTTCTTACATCAGCATTGACTACCTCTTTATCACAACCTCCTACTATTAAGCATACCTCTTTGCAAGCTGCATTAAGTCAGCCACCTAGAACAACATCTTTACTACACAATAGTATTCCAATCATCAGGCCTCCTGTACAGACTCGTACACTTGCTCAAATTAAAGTGGCAAATGCAGTCCGCACACAAGGAACGAGGACATTAGCTCAAATAAAAGCACAAACTAAAGCAAGAGTTCAGATGCGTAGTGTTCAGTTAAGTCCCCACAGTGATACAAGTCCTGTACAGAGCCCACCAAATAGGCATATCCCCAATATCATGTTATCTAGTTATAATAAGAAACAAACTCCTGTTAACAAAACAGTGGAAGGTGAGAAAGTGGAAGAGTTGACAAAGGATGGAATAAACTTGAAACGTTCTTTGGAAATTTGTAATTCTGGATTTCCACATAAGGATCGAGTAAATATGAAAAGATCCATGGAAATATGTCAAAGTGTTATGCAAAAAACAATGGCTCAATATCAGTTGGAGTCAGGAAGTAAAATTCCACAACAAAATGTTTCTGAATCGTGCAATACAAATGTGAAATCTCAATCTCCTGTTAAACTGGTACCTATTGGTAATCACCTAAGTGCCTCTAAATTATTATTGACAACTTCTTCAAATGTTCACACGTCATCAAATGTAGTGAATAGTGCTCAAAGTATGCAAACATCAGTAATCGGTGCCAAGGATGGAACTTATGTGTTATCTATGCCTCAAATATCAACATCTATACCATCAGGCAGTGTTGTAACAGTGCCAGGAACAAATGCCAAGTTTTTAATACCTGCAGGACTAGGATCAACAGCTTTGACAAATCAGACGCTGATGCAGCTGATTAATTCTTCACAGTGTCTGAATACTATTCCATCGTCGCCAGCTAGAGCTTCTAGTGCGCCACCTATAAACAATGTAAAAATTCACAACCTTGTAAGGTCAGCTAGCGTTGGTTTGAATGAATCAAATACAGCTTCACAACCAAATACCTCAAACCATTCTACAACCGGTACTTTAAATATTTCTCCGGGACAATTAAACGTAATCACAAAGAGTGGCACTGTTACTACATCAGGACGTAAAACACCGCAGATACTTATTAAGAGACCTGCATCAGCCAATCAGGCAACTGATAAACAAGTAACAAAAATAGTAGTGTGTAGTGCGGCTCAGTTAGTTCAACAACTGAATGCTAAACACAACACAGTAACAGTGTCAAATCAAACGTCTAAGACAAATGTTTTATTAAAAGATGGATCTAACTGTGCCTGTAATCTGAAAGCTATGATTATATGTAATAAGTGTGGAGCGTTCTGTCATCATGATTGTATTGGACCGTCACGTCTTTGTGTGAACTGTTTGATAAAAACGTGA

Transcript

Bpl_scaf_29371-0.30

CTGTGTTTTGCGTCACATTCACCATGAATTTAGAAATAGCTTCTTTTATAATTCAATTCAGTAGGTGGGATATATTGACAGAATTTAACAAAAAATGTTGTGAGTAAAGTCTTGTTTGTAAAAGTTCCACCATTTTGACGCCATTACAGTTTCTATGGACAAAAATGTAACGTGGTATTGGATTGGACGATGAGCCACATCACGTGATTTTAGCAAAATGGCGAAAAGTGTTTTCTCTTTGTAAAGCTAAAATTCAAGAGTATTTAACGCTTTGAAATGTTATGACAAACTCTACATGATGCAGGCAGATCCAACTAAAGACAAACAAGCAAAAAAGAAGAAAAGTAGGACATGGATAGAAGCTGCGAAAATCGTTTTAGAAAGTAAACCACAGACTCCCATGAACTGTAAAACAATTTTACAAAAGATAAAAGATGAAAATTTAAAGGACATCAGTGGTTCAGTGCCTTTGGCTTGTCTGAATTCCTGTCTTGACATTAACTCTAGAGGCAATGACAGTGTGTTTTATAAAGTATATGGGAGGTCTGATGTGTATGGACTGAGGAATGACATACCCAATGGATCAGAGATTATTGAAGTTAAAGAAGAAGATGAAGATAAGAAGGAAGAGCCAGAAGAGATCATTTCAGTAGATACGTCACCAGATGTTAAAGTTGCTCTGTCGATTACTCAAAATGGAGGTCAAAATTCAGACGATTCTGAAACGGATTCATCACAACCTCAAAAACCTCAGACAATGAAAGAAATCCTTGCAGGTCTACCTGGCTTTAGTATGAAGCCACGGAAGAGAAATAAGAAGTTAAGTCATGCTGCTCAGATAGCTCAGACTAAAGAAGGATGTATTGATCTGGAAACTCCTGATTCTATCTTAGTAACAACCAATCTGAGGGTAAATAAATACAGGAGAATCAAACATGAGGTTCCTAAAGCAGATATGCCTTCACCAACTTCAGAAGTCCATCCAGTTGTCAGCAGAAAACCACAGATTAAAAAGGCTACAATAGTGGCGAACATGTTAAAACAGAGATCAATATTTCAGACTGTTAATAGATTTAAAGACAATCACGATTCACCGGGAGGACTATTGTTAAAGGTTGTACATAAAGATCATACAAAACATGAACCTCATGGTATTAAAAGATCTGTGCCGCTATCAATAAAGCAGATGGATGACATTACTATTGTTAGTCCTCTGAAAAAGCCAAGAACTCCTCCTCTTCCTCCTCCACCTCCTTCACAGCCTCAATCACAGAATATAGGAACATTTAGTCAACCGATTGTAATAACAGAAGTTTCTGATGCCATAGTGTCTAAACCACAAGTTTCTCTTCTTACATCAGCATTGACTACCTCTTTATCACAACCTCCTACTATTAAGCATACCTCTTTGCAAGCTGCATTAAGTCAGCCACCTAGAACAACATCTTTACTACACAATAGTATTCCAATCATCAGGCCTCCTGTACAGACTCGTACACTTGCTCAAATTAAAGTGGCAAATGCAGTCCGCACACAAGGAACGAGGACATTAGCTCAAATAAAAGCACAAACTAAAGCAAGAGTTCAGATGCGTAGTGTTCAGTTAAGTCCCCACAGTGATACAAGTCCTGTACAGAGCCCACCAAATAGGCATATCCCCAATATCATGTTATCTAGTTATAATAAGAAACAAACTCCTGTTAACAAAACAGTGGAAGGTGAGAAAGTGGAAGAGTTGACAAAGGATGGAATAAACTTGAAACGTTCTTTGGAAATTTGTAATTCTGGATTTCCACATAAGGATCGAGTAAATATGAAAAGATCCATGGAAATATGTCAAAGTGTTATGCAAAAAACAATGGCTCAATATCAGTTGGAGTCAGGAAGTAAAATTCCACAACAAAATGTTTCTGAATCGTGCAATACAAATGTGAAATCTCAATCTCCTGTTAAACTGGTACCTATTGGTAATCACCTAAGTGCCTCTAAATTATTATTGACAACTTCTTCAAATGTTCACACGTCATCAAATGTAGTGAATAGTGCTCAAAGTATGCAAACATCAGTAATCGGTGCCAAGGATGGAACTTATGTGTTATCTATGCCTCAAATATCAACATCTATACCATCAGGCAGTGTTGTAACAGTGCCAGGAACAAATGCCAAGTTTTTAATACCTGCAGGACTAGGATCAACAGCTTTGACAAATCAGACGCTGATGCAGCTGATTAATTCTTCACAGTGTCTGAATACTATTCCATCGTCGCCAGCTAGAGCTTCTAGTGCGCCACCTATAAACAATGTAAAAATTCACAACCTTGTAAGGTCAGCTAGCGTTGGTTTGAATGAATCAAATACAGCTTCACAACCAAATACCTCAAACCATTCTACAACCGGTACTTTAAATATTTCTCCGGGACAATTAAACGTAATCACAAAGAGTGGCACTGTTACTACATCAGGACGTAAAACACCGCAGATACTTATTAAGAGACCTGCATCAGCCAATCAGGCAACTGATAAACAAGTAACAAAAATAGTAGTGTGTAGTGCGGCTCAGTTAGTTCAACAACTGAATGCTAAACACAACACAGTAACAGTGTCAAATCAAACGTCTAAGACAAATGTTTTATTAAAAGATGGATCTAACTGTGCCTGTAATCTGAAAGCTATGATTATATGTAATAAGTGTGGAGCGTTCTGTCATCATGATTGTATTGGACCGTCACGTCTTTGTGTGAACTGTTTGATAAAAACGTGACAATGCAATCGGAGATCATTTCAATTTATAACCTGTTTAATTTTAACATAGCGATTATGTCAATGATATTGTGTCATTTGTGTTCACGTGTCTTCATCAATACCTGTGCAACCAAAATTTTTTTTAAATCTTTGCAACGACCTATTCAAAATGTTGAAAACACCTATTTCAAGTCAAATATGGCAGTATTAAAGCCTGCTAACCCATAATAGTTAATATCGTCTGCATTCTTGTCGACCACATTGCCATCTTGCCCCTTATGTTAATCCACAACTCCTTGTACCACATTAGATGGAATGTAACCAAACTTTACCACATTTCCTTCTAATAACGTACTGGTGTCTACGTATACCTATTTTCTTTTCCTTGAATTGGTTTATTGTAAAGTAGGAAATCAAGTTCATTTTCACTAACATCGCAAATGTCACAAGGAAGATAAATCTGTGAAAATAACGGTTTACCACCTATCACAGAAATATTCAATAATCATTGTAGAACACTTCTACATAATAAATGAGAAGCCATGTCGAACTTAAACTAAAACACCCTCAGAGCAAAACCCCAATACAAAAGATAAGGACATTGTAGTAAAAGCTGTATATAAAAGGCATGGAAGGAAACCTTAAAATGTGTCCTTTATGAGCAGTTGTCCTTTATATACAAGTTCAAGTTGTATGTATTATTCATTAAATGAAGAAATTGAAACTGCCCTTTATAGACAGGGATTTGTTCTATACAGGTGCCCTTGAAGACAGACTTGTCTGTTAATGGAGTTATTTCTTCATATATTTTTTAATTTATGAGATCATGAAAACCTGCAATATATATAAATAGAAATATTATGTATTATTCTATATTAGTAAATTCTTTAGTATAGATTTCTATTAAAATCATTCTTTTGAAAAAAAATTATATTCACTTTGCCCTTTCGGGCTCAGTGAATATCATTTTTTTTTTCAAAAGTCAATAAATCCACACATTTGCCTCATCAAAAGACAGTAATTGTATAATATGTTTTAATAACCAACAAAGTATTGCCATGACGTTGTGATTCATCATTAATAGTTATCTATTTTAAAATGAATTTTATATCAATTCTAAATATAGATTGATCACCCGTGTTTCTTTGTCCTCAACTACCTTGTTTTCAATTTTTATCATCCATTTTGCTGTTTGTAATAACTGCTATATTCACTGGACAAAAGACAAATTGCACTTCTCAATAAAAATACTTTTGTAGACACAGTAATTTGTTAAATCAAATCTTCATGAACAGCTGTCATATTCCACAAAGACCTGGCAGTGAAAACCCATTTACAGTATTTAGATTTCTCCATGGTGATTATAATTAAGCTTGTAATATGACTAATTATAGATGTCGGTTTAGAAGACAGTGAAATTCTTTATAGTAAATGGAAATACCCATAATTTTCTCCCACATAAATAGACATTTAGGAATTTTTTCATGAAAAATGTGGTATATTTAAAAACAAAAAACACTCTGAAAGAAAATGGATATACATTATGTGTTGTAGGGGGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05066	HARE-HTH	HB1, ASXL, restriction endonuclease HTH domain	Family	Interproscan
PF13922	PHD_3	PHD domain of transcriptional enhancer, Asx	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007759	Domain	ASXL, HARE-HTH domain	Interproscan
IPR024811	Family	Polycomb protein ASX/ASX-like	Interproscan
IPR026905	Domain	Protein ASX-like, PHD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13578	ADDITIONAL SEX COMBS LIKE PROTEIN ASXL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0035517	Cellular Component	PR-DUB complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11471	ASXL; additional sex combs-like protein	-	Polycomb repressive complex	ko03083	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_29371-0.30 global RNA-seq network