Gene detail

Detailed information of Bpl_scaf_29333-6.28 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_29333-6.28	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Bpl_scaf_29333	702154	722593	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_29333-6.28

ATGAACGAGAAAACTGTAAAGAATATGCATGGTCAGACTGTCAAACTTAGTTCTGCTACACTGAGTACATTAGAACATATGTTTAAAATCATGGATTTCATGTACAGAGACAACCTGAAGTTTGTTGAGGACTACAGAGTTGCTATTTTAAAGACTACCTCATATGTATCAGACAAAAACACAGATGGATCTTGGGTTAATTCCAGAAAAAGAAGGGGAGGTATGAAAAATACACCCAAGTTTATCATCACATTACATTTTTGGTGTATGAACCCTGGTGTGGCATTTTCAGATTTTAATTCCACTCGATGTATTGTTTTAACCAGTGGTACTTTGTCTCCTTTGAACTCATTTGAGTCTGAGTTAGGATCACCTTTCCCTATCAAGTTAGAGGCTAATCATGTCATTGAGGATAAACAAGTGTGGGTTGGAGCAATGAGTCAAGGGCCAACAGGAAAACCATTACATGCTGTATTTAAGACAATGGAGACCTTGGAGTTTCAGGATGAACTTGGTAGAACTGTTCTACAAGTATGTCAGGAAGTACCTCATGGTGTGTTGTGTTTTTTGCCATCCTACAGATCACTAGATAAATTCACAGAAAGATGGAAGATTTCTGGTATATATGACAAAATCTCTCAGACGAAGAAGATAATACAAGAACCTAGACGATCAGATCAGGTTGACTTTGATGAACTGATGAAATACTTCTATGACACAATACATGGTGTTAATGATGAGGAGGATGACATTGGAGAAGAAACAACAGGTGCCTTATTCCTGGCTGTATGTCGAGGTAAAGTCAGTGAGGGTCTAGATTTTGCTGACAATTTTGCTAGAGCAGTTATTACAGTTGGTATTCCCTATCCTAACTGGAAAGACATTCAGGTTGAACAGAAACGATTGTATAATGACAAAAATAGAAATGCTAAGGGACTTTTATCTGGAAGTGAATGGTATGAAATACAAGCCTTCAGAGCTCTAAACCAGGCTCTAGGGAGATGTATTAGACACAAGAAAGACTGGGGTCTGTTGATTCTAGCAGAAGAAAGATTTGTGAAAAATAGAGACAAATATTGCAAAGGACTCTCTAAATGGGTAAGAAACAAAGTACAAGGCTTTACCAGTTGTAAACAAGCTATTGATTCAATATCAAGGTTTGCAAAGGACAGAATTAAGGATATGCCAGTTATAAATCCAGATGCCTCATTCATTCCAGGAACACCAATCACACCAGGTCAAAACTTAGGCAAACAGCCAAATGTCAATATAGCTGCAGCCATGGTTACACCGATAACTCCAGCTACTCCAGTTCATACCTTTTCACGACCTTCCATGGAAACACCATCATTTCCTATATTTCAGACAGCGAAAGAAAAGTTATTTGCCTCAATACAACAGCCTGAGTTTTCATCTCCTGAACCCAACAAGGGGCAGACAATTTCAATAGATTTGACAAAAACACTTGAACATCCTANTCTTACTGAGCTTGTCAGTTTTAACCACGGTAACCAAATTCATGTTACAACAATACAACAACCACAAAATCTAGAGCCTGGTATGGTTTCCTTGTTAAGTGGGAATTCACCTGCCACAACAAGTACACAAAATGATCTTAAAAGTGAAACTGTTTATAATAAACCAACTACACCATCTATTATTCATCAAAAAGGTCATCAAAACTTGAAACAGAATAAATTATTCAAATATTGTACAATTCCAGAAAGTGGTACACAAGCCAAGGGAAGTAATAATGAAAGTCATATATCTGAAGACCAAACCAAAAGTTATACAAACTGCCCAAAAACACCTACTTTGTTTGATACTCAGGACAGTGAGCAGCAAGGACTTGAAACAGATTTAGCAAAACAATGTGGAAATTCGAGTGATTTGGATAAAAATAACTACACTGGTGCTGAAAAAGATCAAATTGATCACAAAAGCAAATATTTCAATTTGAACGACGTTCAAAATCCTAATGTTACAGTCAACAAAAAGCCTATCTTCAGAAGACGTTCTGTTCCTCCAACAATTACAGCAGATGACGATTCTCAAGACGATTTTAAGGACCAGTCTACTAAAGCACAAGTTACAAGAAGGAGATCATGTGACAAGAAAATGTTGACAGAGATTCAACAAAATACCAAAGAAGAGGACAATGTTGACAATAGACAACAACAGATAAAAGATGAAGAAGAAAATGAAAGTGAAGAAATTTTGAAGACAAGACGGAAGCAAAGAGGAACAAAGAGAAAAAGTAATTCAAATCTGAAGTCCACAAAGAAAAAGTCCAAGGGAGTTGATTTTTTGGACAATATTGAAAATAAAAATGAGGAAGCAAGAGAACATGATATTAGATGTAAGAATTGTGGAGAAATCCTCGTATCTCAGTTGAAAGATTTTGAGAGGAGGAAAAGACATCCAAATTTTCTGATAGTTCTCACACGACAAAGAAATACTGAGGTTTTGTTTTTTCCCCTGTTAGATGTACAGAAAACTAGTCTACAAGTTGTATCAACAAAACTCAAAGAAGGTAATTTAATATAA

Transcript

Bpl_scaf_29333-6.28

GAAATGTTTTGCAATTGTTTGTGAAGATATGAACGAGAAAACTGTAAAGAATATGCATGGTCAGACTGTCAAACTTAGTTCTGCTACACTGAGTACATTAGAACATATGTTTAAAATCATGGATTTCATGTACAGAGACAACCTGAAGTTTGTTGAGGACTACAGAGTTGCTATTTTAAAGACTACCTCATATGTATCAGACAAAAACACAGATGGATCTTGGGTTAATTCCAGAAAAAGAAGGGGAGGTATGAAAAATACACCCAAGTTTATCATCACATTACATTTTTGGTGTATGAACCCTGGTGTGGCATTTTCAGATTTTAATTCCACTCGATGTATTGTTTTAACCAGTGGTACTTTGTCTCCTTTGAACTCATTTGAGTCTGAGTTAGGATCACCTTTCCCTATCAAGTTAGAGGCTAATCATGTCATTGAGGATAAACAAGTGTGGGTTGGAGCAATGAGTCAAGGGCCAACAGGAAAACCATTACATGCTGTATTTAAGACAATGGAGACCTTGGAGTTTCAGGATGAACTTGGTAGAACTGTTCTACAAGTATGTCAGGAAGTACCTCATGGTGTGTTGTGTTTTTTGCCATCCTACAGATCACTAGATAAATTCACAGAAAGATGGAAGATTTCTGGTATATATGACAAAATCTCTCAGACGAAGAAGATAATACAAGAACCTAGACGATCAGATCAGGTTGACTTTGATGAACTGATGAAATACTTCTATGACACAATACATGGTGTTAATGATGAGGAGGATGACATTGGAGAAGAAACAACAGGTGCCTTATTCCTGGCTGTATGTCGAGGTAAAGTCAGTGAGGGTCTAGATTTTGCTGACAATTTTGCTAGAGCAGTTATTACAGTTGGTATTCCCTATCCTAACTGGAAAGACATTCAGGTTGAACAGAAACGATTGTATAATGACAAAAATAGAAATGCTAAGGGACTTTTATCTGGAAGTGAATGGTATGAAATACAAGCCTTCAGAGCTCTAAACCAGGCTCTAGGGAGATGTATTAGACACAAGAAAGACTGGGGTCTGTTGATTCTAGCAGAAGAAAGATTTGTGAAAAATAGAGACAAATATTGCAAAGGACTCTCTAAATGGGTAAGAAACAAAGTACAAGGCTTTACCAGTTGTAAACAAGCTATTGATTCAATATCAAGGTTTGCAAAGGACAGAATTAAGGATATGCCAGTTATAAATCCAGATGCCTCATTCATTCCAGGAACACCAATCACACCAGGTCAAAACTTAGGCAAACAGCCAAATGTCAATATAGCTGCAGCCATGGTTACACCGATAACTCCAGCTACTCCAGTTCATACCTTTTCACGACCTTCCATGGAAACACCATCATTTCCTATATTTCAGACAGCGAAAGAAAAGTTATTTGCCTCAATACAACAGCCTGAGTTTTCATCTCCTGAACCCAACAAGGGGCAGACAATTTCAATAGATTTGACAAAAACACTTGAACATCCTANTCTTACTGAGCTTGTCAGTTTTAACCACGGTAACCAAATTCATGTTACAACAATACAACAACCACAAAATCTAGAGCCTGGTATGGTTTCCTTGTTAAGTGGGAATTCACCTGCCACAACAAGTACACAAAATGATCTTAAAAGTGAAACTGTTTATAATAAACCAACTACACCATCTATTATTCATCAAAAAGGTCATCAAAACTTGAAACAGAATAAATTATTCAAATATTGTACAATTCCAGAAAGTGGTACACAAGCCAAGGGAAGTAATAATGAAAGTCATATATCTGAAGACCAAACCAAAAGTTATACAAACTGCCCAAAAACACCTACTTTGTTTGATACTCAGGACAGTGAGCAGCAAGGACTTGAAACAGATTTAGCAAAACAATGTGGAAATTCGAGTGATTTGGATAAAAATAACTACACTGGTGCTGAAAAAGATCAAATTGATCACAAAAGCAAATATTTCAATTTGAACGACGTTCAAAATCCTAATGTTACAGTCAACAAAAAGCCTATCTTCAGAAGACGTTCTGTTCCTCCAACAATTACAGCAGATGACGATTCTCAAGACGATTTTAAGGACCAGTCTACTAAAGCACAAGTTACAAGAAGGAGATCATGTGACAAGAAAATGTTGACAGAGATTCAACAAAATACCAAAGAAGAGGACAATGTTGACAATAGACAACAACAGATAAAAGATGAAGAAGAAAATGAAAGTGAAGAAATTTTGAAGACAAGACGGAAGCAAAGAGGAACAAAGAGAAAAAGTAATTCAAATCTGAAGTCCACAAAGAAAAAGTCCAAGGGAGTTGATTTTTTGGACAATATTGAAAATAAAAATGAGGAAGCAAGAGAACATGATATTAGATGTAAGAATTGTGGAGAAATCCTCGTATCTCAGTTGAAAGATTTTGAGAGGAGGAAAAGACATCCAAATTTTCTGATAGTTCTCACACGACAAAGAAATACTGAGGTTTTGTTTTTTCCCCTGTTAGATGTACAGAAAACTAGTCTACAAGTTGTATCAACAAAACTCAAAGAAGGTAATTTAATATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045028	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:1990918	Biological Process	double-strand break repair involved in meiotic recombination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15362	BRIP1, BACH1, FANCJ; fanconi anemia group J protein	EC:3.6.4.12	Homologous recombination	ko03440	PMID: 28812709
K15362	BRIP1, BACH1, FANCJ; fanconi anemia group J protein	EC:3.6.4.12	Fanconi anemia pathway	ko03460	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_29333-6.28 global RNA-seq network