Gene detail

Detailed information of Bpl_scaf_28956-1.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28956-1.15	CELL CYCLE CHECKPOINT PROTEIN RAD17	Bpl_scaf_28956	142616	182893	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_28956-1.15

ATGGATGAAGGAGGATCAGTTATTGATCTTACAGACTCCCCACCTCCATTGGAAAGAAAGAGAAAAAGATCAGCTGCTGTAACTGAAAATAAGAAGTCTACTCCATGGGTTACATCAGCATTTGATGATTTCTTTGATGTGTCATCTTCAAACTTAAATAAACAAAAACCAGCAAAAAAAGAAAATTCCAAGGTTTCTTGGTCAAGGAAAAGCTCTTTCAACGACGTCAACAATAGTCAAACAGGATGTGAAGGAGCAGTTTCTATTGATGCCTATTTTAGAAGTTCCCATTCGTCAAATAAAAAAGTTGTAAATAGTAAAAAGAGGCCTACAGTAGAAACAGATCTCTGGTCTGACAAACATGCACCAAAGTCACAGGCTGATTTAGCAGTACACAAGAAGAAAATAGGTGAAGTTGAATATTGGCTACAGAAACATCTGACTGGACAAAATAAGCTTCCACCCATACTTTTACTGACAGGACCAGCAGGAGTTGGGAAAACAGCCACAATACAAGCTTTGTCACACGATCTTAAGTTTAAAGTTCAAGAGTGGATCAACCCATTAACGACCAGTAATGAGCAGAGTTTTACAGACAAGTTTTCAGGTGACAGGCCTTTTAAATATGTATCAACAGAGTCACAGATGTCATTGTTCCAGCAATTCTTGTTACGAGCTAACAAGTACAATGCACTCAGTATATTCGGTGAAGGTGAAACATCACGTAAAATCATTCTAGTGGAGGAATTTCCTAATGTTTTTTACAGAGACGCATCTACTTTCCATGACATTATAAGGAAATACAGGAAAGTAGGTAAATGTCCTTTGGTGTTTATAGTAAGTGATTCAACTAAGGGTGAATCAAATGAAAGACTTTTGTTTCCTAAAGATCTACAACAAGAACTGGATGTTGAAAATATAAGTTTTAATGCAGTTGCCCCTACAAGTATGGTAAAAGTACTAACAAAGATTTCAACTCAAGAATCCAGCCAGGGAGCTCATAGGTTTACGATTCCATCCAAGATTGTTATAGAATCAATAGCCATGTCCAGTGCTGGTGATATAAGAGGTGCTATTAATGCATTACAGTTTGCATGCGAAAAAGACACTGGTGACCTTTTATCTGGAGGTAGAATCAAAGGGAAGACAACTCTTAAGAAACATTCCAGTAGTCGTTCATCTAAAGCAAAATCAAAGTCATCTAAAGCTGCAGAGAGCCAGGGAGAAAATGAATCAGAATTAGCATCTATTGGGGGAAGGGATACTTCATTGTTTTTGTTTAGAGCCCTTGGTAAAATTCTGTATTGCAAAAGAGATGATCCATCAAACTACACAGATTTACCAAGATTACCTCCTCATTTATCTGAGCATGAGAGGGATCCTTTAATTATTAATCCTGAGGATGTGATTGAGAAATCTCATTTGTCAGGAGATTATTTCACAGCCTACCTTCACCAGAATTATATAGAATTTTATACAGATATATCAGACCTAGTCAGATCAACAGAATACCTGAGTGATTCAGATTATCTCACCGTAGACTGGTCTTCTAGATCAGTATTACAGCAATATGCAGCATCAGTAGCCACAAGGGGGATAATCCATTGTAATACATCACGTAGTAAACATGATGCAGTTAGTTCTGGGTTAGGTTGGCGGCCATTGCATAAACCTCAGTGGTACACAGCGAATAAAAAGGCAAGACAGAATGGAGAGTCATCAAGAAGTTTATTTAAAAGTACTTGTCATGGTTGTCCACCTGTGGTGCTACAAACAGAAATACTGCCATACCTATCATTAATTAATGTTACTTTACATAATCCAGGCCAGATATCATTTTTACAAGAGATTTGCAGATTCTCAAAATTCAAACCATCTATAAGATCTGAAAAATTAGATGAGAAAGATGTTGAATTAGACACAGATGATGCTTCTCAAGTTGTTCCCTTCTTAGCAGACGACACTAGATCTGTAACCAAGGATACTGATGACACCATTAGTAATAGCCAATCAAAAATTGACCCTTCACAGGAAGAAGAGGAATATGAAATAGAAGATTTTGACTATTGA

Transcript

Bpl_scaf_28956-1.15

AATTATTATGAATATTATAGTTGCAATTATTTAAATTAGATATACCTACCTTGAAGAAATTTTGGATTTATTTATATAATCAACGCCCACTTTTCTATAATTAAATTGCCGGTCTTTTACGAGTATTATAATTATACTTCGGTATGTTCCGACTTATTTCGGTCGATTCTAAATTAACATACACACTCAAATACGTCAAAAAACTATCCAATTAAAAATTTCTCGATATACGCGAACTGGACGAGAATTCCTTTACTTATTATAAAATCCCGAGATACATCGAATGGTAAAATCGGCCATTTTCTAGCATGTTATTTGCCGTTTCCATCCCCTTTCCATATGACATCCCCTGCCGGTGTTTTCAAAGTTGACAAAAATCTTGTAAAGGCATATGTACTAGTTAGTCTAGGTATACATTACATATGCAAAGATTATTTCGAAGACAGAACAAATAAGTAAATTGGCTATATTAATGGATGAAGGAGGATCAGTTATTGATCTTACAGACTCCCCACCTCCATTGGAAAGAAAGAGAAAAAGATCAGCTGCTGTAACTGAAAATAAGAAGTCTACTCCATGGGTTACATCAGCATTTGATGATTTCTTTGATGTGTCATCTTCAAACTTAAATAAACAAAAACCAGCAAAAAAAGAAAATTCCAAGGTTTCTTGGTCAAGGAAAAGCTCTTTCAACGACGTCAACAATAGTCAAACAGGATGTGAAGGAGCAGTTTCTATTGATGCCTATTTTAGAAGTTCCCATTCGTCAAATAAAAAAGTTGTAAATAGTAAAAAGAGGCCTACAGTAGAAACAGATCTCTGGTCTGACAAACATGCACCAAAGTCACAGGCTGATTTAGCAGTACACAAGAAGAAAATAGGTGAAGTTGAATATTGGCTACAGAAACATCTGACTGGACAAAATAAGCTTCCACCCATACTTTTACTGACAGGACCAGCAGGAGTTGGGAAAACAGCCACAATACAAGCTTTGTCACACGATCTTAAGTTTAAAGTTCAAGAGTGGATCAACCCATTAACGACCAGTAATGAGCAGAGTTTTACAGACAAGTTTTCAGGTGACAGGCCTTTTAAATATGTATCAACAGAGTCACAGATGTCATTGTTCCAGCAATTCTTGTTACGAGCTAACAAGTACAATGCACTCAGTATATTCGGTGAAGGTGAAACATCACGTAAAATCATTCTAGTGGAGGAATTTCCTAATGTTTTTTACAGAGACGCATCTACTTTCCATGACATTATAAGGAAATACAGGAAAGTAGGTAAATGTCCTTTGGTGTTTATAGTAAGTGATTCAACTAAGGGTGAATCAAATGAAAGACTTTTGTTTCCTAAAGATCTACAACAAGAACTGGATGTTGAAAATATAAGTTTTAATGCAGTTGCCCCTACAAGTATGGTAAAAGTACTAACAAAGATTTCAACTCAAGAATCCAGCCAGGGAGCTCATAGGTTTACGATTCCATCCAAGATTGTTATAGAATCAATAGCCATGTCCAGTGCTGGTGATATAAGAGGTGCTATTAATGCATTACAGTTTGCATGCGAAAAAGACACTGGTGACCTTTTATCTGGAGGTAGAATCAAAGGGAAGACAACTCTTAAGAAACATTCCAGTAGTCGTTCATCTAAAGCAAAATCAAAGTCATCTAAAGCTGCAGAGAGCCAGGGAGAAAATGAATCAGAATTAGCATCTATTGGGGGAAGGGATACTTCATTGTTTTTGTTTAGAGCCCTTGGTAAAATTCTGTATTGCAAAAGAGATGATCCATCAAACTACACAGATTTACCAAGATTACCTCCTCATTTATCTGAGCATGAGAGGGATCCTTTAATTATTAATCCTGAGGATGTGATTGAGAAATCTCATTTGTCAGGAGATTATTTCACAGCCTACCTTCACCAGAATTATATAGAATTTTATACAGATATATCAGACCTAGTCAGATCAACAGAATACCTGAGTGATTCAGATTATCTCACCGTAGACTGGTCTTCTAGATCAGTATTACAGCAATATGCAGCATCAGTAGCCACAAGGGGGATAATCCATTGTAATACATCACGTAGTAAACATGATGCAGTTAGTTCTGGGTTAGGTTGGCGGCCATTGCATAAACCTCAGTGGTACACAGCGAATAAAAAGGCAAGACAGAATGGAGAGTCATCAAGAAGTTTATTTAAAAGTACTTGTCATGGTTGTCCACCTGTGGTGCTACAAACAGAAATACTGCCATACCTATCATTAATTAATGTTACTTTACATAATCCAGGCCAGATATCATTTTTACAAGAGATTTGCAGATTCTCAAAATTCAAACCATCTATAAGATCTGAAAAATTAGATGAGAAAGATGTTGAATTAGACACAGATGATGCTTCTCAAGTTGTTCCCTTCTTAGCAGACGACACTAGATCTGTAACCAAGGATACTGATGACACCATTAGTAATAGCCAATCAAAAATTGACCCTTCACAGGAAGAAGAGGAATATGAAATAGAAGATTTTGACTATTGAATTTGTTTCTTTCTTTCAAACAATTATTTATGTGACATTGTTTTGTTTTTTTTAGCTCACCTGACCTTAAGGGTCACATGAATTAATGTCATCACTTTACGTCCATCATCATCTGTCGTCTGTAGACTTTTACATTTCAATCTTTTTCTCCGAAACCACTGGGAAAACTGATGCCACCTTTGGAAAGAACATTCATTTATTTGGATCATCCTCTACAAAGTTTTTATTTTTTGTTCTAATCAGAAATCAACTTTAGAAGCAAGAGGCCCCAAGGTGTCAAAAAAGGTGCCAATAAACACCAGTAATCCTAATCCACCCTTATTTATCTGATGTCAATGTCATGTGATATGAAGTGGTTAAAGGGTTAAAGGTTAAAGCTGAATGTTAGTGCTGAAAATGAAAAATTTGATATATAGTCCTGGCTTGGATTTCTCGAGAGAGAAAAAAATAAATTCGAAAGTCTGAGAATTTTCTCTCAAATTTGAGAAGAATTCATTTCTAAAAAAACCTGAGATTTTTATTTTACTTAAACTCAACAAAAACTTAAGTCACCTTGATACCAAGCTTAAGATTGAGAATTGTATCATAGGTGGGCATTGGGATCAATAATTCATTTGTTGCCATGTACAAAATAATTGAACATCTCTTCAAATAAATTAAAGAGAGGTGTAAATAGTTAATGAGAGGTAATGATTTGAGTTTCTGTAGATTCAGCATTCCATATTTGTTTATCAGTGCAGTGCGAACGTGAGAGAGAACACTCATGAAGGCATTTAAAATAGTCTGCAATATGACATTTGTTTAAACTGTTTTTATTAAATCTGACACATTTTTGTAACCTTTAGATGTTGCAGGATGAATACATTTGAAATGAAGTAAGATTAAGATAAGTCACTTATCTCATTCACGAAAGCTTAGAACTCTGCTAAGAAACTTGAGATTTGTTCAAGAATCTGACCTGGGGAAAATTTCAGCTAAGGCCACTCCAAAATGATTACTTGTTCTTCGGATTTTTTCATTATAAATATGGAGCGGGCGAGCGAAATTTTTTAACTTATTTTTTTTTCTGAAAATTGAATTTTTGGAGGTGCTAAAATCTTGAACAAGCGAGCGACACTTTTTTATATTTTTTTAATCATTTTTTCCCTCATTTTTGTGTTTTTAAATGAGAATTCAAGATATTTTATAAGCGGGCGACTTTTTTTATTTTAAATTGTTTAAAAATCATGAAACTTGAAGAGGGCATGTTGAAGAAATGGTGAGGAAGCATATTTTGTCGACATTTTCAATCTGAATTTTAAGGTGCGAGCAGGTCCGAAGAACAAGTATTTAATTTGGAGTGGCCTAAGTTAAGTTTTTGAATTTGAGTGACTTAATTTAATTCGAGAAATACAAATCTGTGGAAGGAGCTGTCGGGATCGTGATCGTATGGTACATTGTAATTGGATCTACAATTACATATTCAATCAGTTGCTATCACTACTGACGTTGTGAGTTTGAATCCCACTCAAGCAAGGTGTATGCGATACAACATTATGTGATAAAGTTTGTCAGTGACTTGCAACAGATCAGTGGTTTTCTCTGGGCACTCCGGTTTCCCCCACCAATAAAACTGACCGCCACGATATAACTGAAATACTGTTGAAAGTGGCATTAAATACCATAAACCAATCCAAAACAAGTCTGGAATCTTCTCTTGGCAAAACGAAAAAAAGTATGTGTTTGTAAGTTAGTATAATACTAAACTGATTACAGCTATGACGTGGAACAGTGCTAACTAATACTGTGATATCTTGTCCTTGAATCTCATATTACTTTGTTGGAGGGTGAATATTGATCTTGCATCCCCTTCACAAGATCAACCAAGTCCCATCAAAAGCTTGTCAACTTGTTGAAATCTATTTAATTAATAGTTATGTTAATTGTATTTAATTTCACACCACAATTTATTTTGAATTGGTAGATTTGATTTGTTGTACACCGTAATAAACTTGTTTCTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03215	Rad17	Rad17 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR004582	Family	Checkpoint protein Rad17/Rad24	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12172	CELL CYCLE CHECKPOINT PROTEIN RAD17	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003689	Molecular Function	DNA clamp loader activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033314	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06662	HRAD17, RAD24; cell cycle checkpoint protein	-	Cell cycle - yeast	ko04111	PMID: 28812709
K06662	HRAD17, RAD24; cell cycle checkpoint protein	-	Meiosis - yeast	ko04113	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28956-1.15 global RNA-seq network