Gene detail

Detailed information of Bpl_scaf_28859-0.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28859-0.6	GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL	Bpl_scaf_28859	15180	46283	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_28859-0.6

ATGATTGGCTTTTTCGTAGTTCCGCTCAGTTATTTACAAGAAGATATTGGACAAAGACTTCAATTACTACAGGATAGCCAGAGTACAGTACAGTTTAAACAGTCAACCCCAAAGCCTGTTGACAGCGAGATGGAACGTAGTGATTCTGTGATCGTAACTACAAGAAGCCAAACGTCTCAGCAAACAGCACAAAGTAGAACTGAGGGGATAGTAGAAGACGAAACCAGGCAACAAACAACGCCGCACGGAGGCGCAAGGCCAAAGACTACGAAAATGAACACGGCGGCATATGAGGACAACAAGGAGGATAAATTGTTAGAGATGATGCAGGCGTTTAATAAGAAGCTTGACGATTTGCAGAAAGACTTAGAAAAAGTTAAAAGAAATCAAGCTGGTACCAAACGCAACGCCAGAATTAGTGACCTCAAAAAGGATACTGAGTGTTTCAAATGTGGGCAAAAAGGTCACTGGAAAAGTGAATGTAAAGAACAACAGCGAAGGCGACCACAGATAGAAGAACCTCCATGTGACCCGAAAACTTTTGTAAACATTGCATCATCTGTCTGTTGCGGAAACGTTACTGTGTTTGAAATGGCATTGAATCTATCAAGAACACGTCTTCTGAATGTTATCAGACAGAGTTTTACAGTAGGCTCCTGTAGATGTCAAGGAACAGCTCAACCACAGGTGCAAAAGAAAGATTCTTCAAAGATTGAAGCTACATTTAATTGGCAAGATGCACTTAATCTTGAAAGTCTACTCACAGAAGAGGAGATACTGGTACGAGACCAGTTTAAAGCATACTGTCAAGACAAATTGATGACAAGAGTTTTAATGGCAAACAGACATGAAAAATTTGACTTGGAGATTATACCAGAGATGGGGTCTATTGGAGTACTAGGACCTACAATACAAGGTTATGGTTGTGCCGGTGTTTCCTCTGTAGCCTATGGTCTGATTGCAAGAGAGGTAGAAAGAGTGGACAGTGGTTACAGATCAGCTATGAGTGTCCAGTCATCCCTAGTTATGCACCCTATAAATGAATATGGAACGGAAGAGCAAAAACAAAAATATTTGCCAAAATTAGCCAAGGGAGAATTAATTGGTTGTTTTGGATTAACAGAACCTAACCATGGTAGTGATCCGTCGTCAATGGAAACAAGAGCTAAATATAATCCATCCAGTAAAACATACACATTAAATGGAACAAAATCTTGGATAACAAATTCACCGATTGCTGATGTATTTATTGTGTGGGGTAAATGTGACAGAGACAACAACAAAATTAGAGGATTTATTTTGGAAAAGGGTATGAAAGGATTGACTGCTCCAAAAATTGAAGGAAAGTTTTCATTACGTGCTAGTATTACAGGACAAATCTCCATGGAAGACGTGGAAATACCAGAAGAAAATATGCTTCCTAATGCAATGGGGCTTGGGGGACCATTTGGGTGTTTAAACAGCGCTCGTTATGGTATTGCTTGGGGGACATTAGGAGCAGCAGAATTTTGTTTAGAAACAGCAAGACAGTACACATTAGACAGATACCAGTTCAAAAAACCTTTAGCGAAAAACCAACTGATACAAAAGAAAATGGCTGACATGTTAACAGAGATATCTCTAGGTTTACAAGCATGTATACAAGTTGGACGACTAAAAGACGAAGGAAAAGCAACACCTGAAATGATTTCAATGATAAAGAGGAATTCCTGTGGTAAATCATTAGACATTGCTCGTACAGCTAGAGACATGCTCGGTGGCAATGGAATCTCTGACGAATATCATATTATTAGACATGTGATGAACTTAGAAGCTGTCAACACATATGAAGGTACTCATGATATCCATGCCTTGATATTAGGTAGAGCAATCACTGGACTCCAAGCATTCACAGCTGATTAATAAGGATCACACATTCACAACAGATAACTAAGGATCAAGCTTATAAGATGTCCATCAATTTTCTAGTCATATAATGATCATATGAGATACACTGACATTATGATGTACTATTTTAACTAATATTATCACTCCAGAAACATATACTGCATTATTCAGGCATTAAGTGACTTACCTGTAATTTTGTTCTTGAACTTTTACATGTAGCACATAATCAGAGGAGGCATGGGGGGTCATTATCTGCTGACAACAAGCCTAACATTACTGAAGTGGGTTCAAGCCTAGATATCCATCGCAAATGTTAAAGTTTTCTGACAACTACCCCCAAGGCCGGGGGTTTCAATGGTAAGATTATTACACATTTTGCTATTGAAGCTTTCCTCTCCATCAGGTCTGGTCATGATATACTGATAAATTTGCTGAAAGTGACGATAAATATGAATAACCCCTAACCTGAAACAAAACAAAGATGTTTTCATGTACTTGGTGGTGCAGTTGTTTCGTACATCTTGTGAACACTTAGTTAAAATATTATCTGACAGAACTGCAAGTGAAGCTCTGCTGACTTCATGGAAATTATAGATTTACCCATAGTATTGCTATGTTTATATGTGTGAAATTTTATATGAATATATTTGATTGTATTGAAAAAATAATGTTTTTTTCTCACAAAAGTAGCAAATTGCTATTAGGGATTAGGGAAAAATTACTAAAGGGATTTTAATTTTGTATCTGGGAGTGATTGTTTTAATAGCAATATATTTGTAGCAAGAGAAATGCTTACTTGAGACAAACGAACAATAAAATGTTTTATTGACTTCAATCATTTACAATGTATTGCTATTTGAATGAAAAATTAACGTAATTATTATTAACTGTGATATGTCCATTTTTGTTATCACACCACAACATTTTGGCGGTGGGTGATATTATAATATGAGTATGTGGTCATTTTACTTCAATAGATGCAGTGATTTATTCACTATAATTTTAGTTGTTTTACTGATTATTCTACAACTTGAACACAGTGATCCTTGGCATGGTTTAAAGGTTTGGTTTAATTTTGGGAATTCAAGCCCCATCTATTTTCAGATACCAGGTCCAAATGTCTTGTCATTTCTATATCAACTTGCTGCCTTGGTATGAGACTGCCACTAGGTGATAGTCATTTATTTTAATTTTAATTTAATTGTTTTTGTGCCAAATGACTTCTATATATAAGCCTGGCCCAATCATGGGTCAATCTTTTTACTTGCAGTAGATCAACTTCAGAATAAACTTAATATACGAGTGAGTTATCAGTCTACTAATGTTAGATATGTTAAGACTGTACTTTCCTTTTGTAGCTTCATAAATCTTTTCTTAGCTGATTGATAACATTTTTTATTTGTTTTTCCTATCCTTTGTTATACACATAAAGATTTATTTTGATTTTAAATGGTTTATGATGCATTGTTTAATGTTAAATTACTGGTAATAAACTGTTTGTAAAGCTGGGGATAATGTTGGAACCAGCTGACAGCTTAATGACTGGTTGCAATTTTAATAAGCAACAAATGTACAGTGAAAGAAATATGGAGGCTATATATAAATAAATATGTGTGTTATGTCACTTCTGTTTTGGTCACTTATGTATCATTCACCTTTTTATCATTTGTTTAAAATTAACCAATCAAAATTTGATGTAATAGTAGAAGACTATAGATAATTAACATATATTGGACGTTGGAATATTTTATTGCGTTCAATATATATTTATGAAATTATTCTACACACATTGCTTTGTTGTTGAAAATTTGAAATTATTTGAAAATATAACATGTCTACCCAACAATAAACATACCCAATACAGACTTTCCAGATTTGTGGATGAGATTCATATTGTGGTTTTCTCATTCTTTTAGTCTAATCTAATTGGAAAAACAGGTTTTAAATCTCAAAAAACACTGAACAACTGATGCATAATTGTCTTTTACTTTATATTAATATCATAAAGTGAGCCATTTTTGTAGCTTAGAAATATAATTATTTTAGTTGTGAAGAATTGTTTTTAATTATTATGATATCAATTGTTGACCTTTGAAATGGTATGAAAATATATTTTAAAGTCATTAATATTTATGTATTGTTTATTTTGTGAAAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR052033	Family	Mitochondrial Glutaryl-CoA Dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42807	GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000062	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0004361	Molecular Function	glutaryl-CoA dehydrogenase activity	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0033539	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0046949	Biological Process	fatty-acyl-CoA biosynthetic process	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00252	GCDH, gcdH; glutaryl-CoA dehydrogenase	EC:1.3.8.6	Fatty acid degradation	ko00071	PMID: 28812709
			Lysine degradation	ko00310	PMID: 28812709
			Tryptophan metabolism	ko00380	PMID: 28812709
			Benzoate degradation	ko00362	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28859-0.6 global RNA-seq network