Gene detail

Detailed information of Bpl_scaf_28677-4.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28677-4.10	SNF2/RAD54 HELICASE FAMILY	Bpl_scaf_28677	376525	412121	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_28677-4.10

ATGAGCAATAAATCTAAGTTATCAACCCTGTTGCAGTACAGATTTGTGAAGAAGCGTGTAGAAAAAATTTCAGTTGAGAGCCGTGATGATGAGAAGACGAGTACAGAAGAATCAGATAATAGCCAGGAATCGCAAAATGGATCTGGTATTCTTACAGATAATAATGTTGACATTCCGACCATCTCCCTAAAATATGAGGACAGTTGTACTTCAACTCCTACTGTCAATGGAGACTCACAAACTACAATACCAGAAACACCAGTGTCTGAAACTCCAAGTAGTCCATGTTCATCTGTTTTCCAACAAAAACAAAAATTTCGACAAGAAAATGTAATAGAGTCTGACGAGGAAGTGAATTCTTCAGCAGACTGGATGTCCAAGGATAAAGGCATTGTGATGAATGGAAACTGTAAAGGTCATAGTTCCAAGAGAAAACAGAAATTGGTCAACCGTGATATTGACGAGTCATCAGACGACGAAGATTTAGATGGCATCCAGACAGACAAAGTCCGACAGATAAAGGACATGTTCCCAGCAGCAGAATCCAAAGTGGTTGTAGCAGTTCTTCGACAAAAGGATTGGAATGTAGAAGAAACGATCGATGTATTCATTTCAGGAAAAGTACAAAAAATACTTAATCAACCGGTGAAAAAGAAAAGAGTGGTAAGACTCGCAAGTAGTGATTCTGAAATGCCCGAGTTAGCTCCCCCTAAGAAGAGAGCTCGCATTGTACAATCTACTGACAGCGAGAACATGGACAGTCAAACTACTGTAACTTGTTCTCAGACTGCAGACAGTCAGGCTACTGTAGATTATGACATTGAAGACCAGCAGACAAATACACAGGATGACAAAACAAAAATCAAATTCCTCACTGAAGCTTATCCTGAAAAATCTAAAAAGTCACTAAAGAAGTTACTCTCAAGGAACGACTGGTCACTAGAAAAATGTACAGAAATTCTTGAAGAAACAGAGAAAAGGAAAAATCATGGAGATTATGCTGATGCTTTAGATGATGAAGGTGAAGATTATGACAGCGATGCAGGGGCAGATAGTGAAGACAGCATAGATGAAGAGGATACTGGGGAAAGAGCTATCATTCTGTCATTTTTTGAGGATTCAACATTAGAAGAATTAAGCTGCATGCCGGGAGTTTCCAAGAAGAAGGCTGAATTGATAATGGCATTGAAACCATTTATGTCTTGGAATAATCTGGTAGAGAAATTTACGACAGCAAAAGGCTTATCTTCCGATGTCGTTCATAGCTGTCATGAAATTATTCGTGTTAGAAATGTTGTTATTAAACTGATGGAAAAATGTGAGAGAATTTCAAAGGAAATGGAAAACGTGGTTTCATATCTTACTAACAAAGGAGATATGGTTGATGACGATGGTGACGACATTCAGATCAAGAAACAACCAGGAAATCTTAATCCTAGTCACCAGTTGAAGCCTTTCCAAATGGTTGGACTCAATTGGTTAAGAATAATGCACACACAGCATCTCAATGGAATCCTGGCAGATGAAATGGGCTTAGGTAAAACCATACAGACCATTGCTTTCCTGGCTCATTTACTGGAAGAAGGAGAGACTGGTCCTCACGTAATTATTGTACCATCTTCTACAATAGATAACTGGTTACGGGAGCTACACACGTGGTGTCCAGCTTTAAAGCCCTTGATTTACTATGGATCTATGGATGACAGAAGATCTGTTAGACAATCACTTCTCTATGATAATTATGATGACTACAATGTCATTGTTACTACTTATAACATGGCCACTGGTAATGTTGAAGACAGAGCTCTGTTTAAGAAACTAGATTTTCATTATGCTATCTTTGATGAAGGACACATGCTGAAAAACATGTCGTCCATGAGGTATCAGAATCTCATGAAAATACAAGCTGAGAGACGTCTTCTGCTGACTGGGACACCATTACAAAACAATCTCTTAGAGTTAATGTCACTCTTGTGTTTCGTAATGCCAGAGATTTTCTCAGGAAAGACGGAGCATCTCAAAAAGATGTTCTCTTTGATCACAAGATCTGGTGATGAAAAAAGCAAGTACAGTGCTGAAAGGATAGCTCATGCTAAACGAATCATGAAGCCGTTTGTTCTTCGACGTCTCAAGTCAGAGGTTCAGAGACAGTTGCCCAAGAAATCTGAAGAGTTAATAAGATGTGAAATGACAAACGATCAAAAAGAAAATTATGACTATCTAGTGAAAAATTTCTCTCAACGAATTAAAGAAGAAGGAAATGACATTATGAAAGCTGGTGGTGCCTCCATGTTGATGCAGCTGAGAAAAATGGCCAATCATCCTCTCTTGTTACGCAACCATTTTACAAATGAAAAACTCCATATCATGTCAAAATTGATTGCAAAGGAACCATCACATATTGAAAGGGGAGCCTTACCAAATTTGATTTTTGAAGATATGACAGTTATGCACGACTTTGAAATAATGAATCTATGTGACCATTATAAGAATTATATAGGAAAATTCCAGTTGGACAAGTCAATGATTGGACAATCAGGAAAATTTATAAAATTAAAGGAATTGTTACAAGATCAAAGAGAAAAGGGAGAGAAAGTTTTGATATTTAGCCAGTTTACTATGATTATGGATATCATGGAAAAATTCCTGAAACAGCTCAACTACAAATATCTACGAATGGATGGCCAAACTCCTGTTACAGAAAGACAAGATTTGATAGATAAGTTCTCAAATGATGATAGTCTGTTTATCTTCATGTTGTCGACTAGAGCTGGTGGTATGGGCATCAACTTAACTGCAGCAAGTACTGTTATCTTACATGACATAGATTTTAACCCTTACAATGATAAACAAGCAGAAGATAGGTGTCATAGAGTGGGCCAAACAAGAGAGGTGACCGTTATACGATTGATCAGTGACCATACTATAGAAGAGGCCATGTTAAGATGTGCACAGGAGAAATTAAAATTAGAAAAAGATATAACAACTGATGAAGGTTCTGATACAGACAACCCTAACGATGTAGCATCATTGTTGAAGCAAGCATTAACTGATGGCACTGTTTGA

Transcript

Bpl_scaf_28677-4.10

AATTTTTGTATGTCTGCTGTATCGGCATTTTCACAAAGAACAGAAAAAAAGAGTTTCATAAGATTTAAGTCAATCTACGCAGTACATGTTCTAATTTTTAAGATATTTATTTGCCGATTATGAGCAATAAATCTAAGTTATCAACCCTGTTGCAGTACAGATTTGTGAAGAAGCGTGTAGAAAAAATTTCAGTTGAGAGCCGTGATGATGAGAAGACGAGTACAGAAGAATCAGATAATAGCCAGGAATCGCAAAATGGATCTGGTATTCTTACAGATAATAATGTTGACATTCCGACCATCTCCCTAAAATATGAGGACAGTTGTACTTCAACTCCTACTGTCAATGGAGACTCACAAACTACAATACCAGAAACACCAGTGTCTGAAACTCCAAGTAGTCCATGTTCATCTGTTTTCCAACAAAAACAAAAATTTCGACAAGAAAATGTAATAGAGTCTGACGAGGAAGTGAATTCTTCAGCAGACTGGATGTCCAAGGATAAAGGCATTGTGATGAATGGAAACTGTAAAGGTCATAGTTCCAAGAGAAAACAGAAATTGGTCAACCGTGATATTGACGAGTCATCAGACGACGAAGATTTAGATGGCATCCAGACAGACAAAGTCCGACAGATAAAGGACATGTTCCCAGCAGCAGAATCCAAAGTGGTTGTAGCAGTTCTTCGACAAAAGGATTGGAATGTAGAAGAAACGATCGATGTATTCATTTCAGGAAAAGTACAAAAAATACTTAATCAACCGGTGAAAAAGAAAAGAGTGGTAAGACTCGCAAGTAGTGATTCTGAAATGCCCGAGTTAGCTCCCCCTAAGAAGAGAGCTCGCATTGTACAATCTACTGACAGCGAGAACATGGACAGTCAAACTACTGTAACTTGTTCTCAGACTGCAGACAGTCAGGCTACTGTAGATTATGACATTGAAGACCAGCAGACAAATACACAGGATGACAAAACAAAAATCAAATTCCTCACTGAAGCTTATCCTGAAAAATCTAAAAAGTCACTAAAGAAGTTACTCTCAAGGAACGACTGGTCACTAGAAAAATGTACAGAAATTCTTGAAGAAACAGAGAAAAGGAAAAATCATGGAGATTATGCTGATGCTTTAGATGATGAAGGTGAAGATTATGACAGCGATGCAGGGGCAGATAGTGAAGACAGCATAGATGAAGAGGATACTGGGGAAAGAGCTATCATTCTGTCATTTTTTGAGGATTCAACATTAGAAGAATTAAGCTGCATGCCGGGAGTTTCCAAGAAGAAGGCTGAATTGATAATGGCATTGAAACCATTTATGTCTTGGAATAATCTGGTAGAGAAATTTACGACAGCAAAAGGCTTATCTTCCGATGTCGTTCATAGCTGTCATGAAATTATTCGTGTTAGAAATGTTGTTATTAAACTGATGGAAAAATGTGAGAGAATTTCAAAGGAAATGGAAAACGTGGTTTCATATCTTACTAACAAAGGAGATATGGTTGATGACGATGGTGACGACATTCAGATCAAGAAACAACCAGGAAATCTTAATCCTAGTCACCAGTTGAAGCCTTTCCAAATGGTTGGACTCAATTGGTTAAGAATAATGCACACACAGCATCTCAATGGAATCCTGGCAGATGAAATGGGCTTAGGTAAAACCATACAGACCATTGCTTTCCTGGCTCATTTACTGGAAGAAGGAGAGACTGGTCCTCACGTAATTATTGTACCATCTTCTACAATAGATAACTGGTTACGGGAGCTACACACGTGGTGTCCAGCTTTAAAGCCCTTGATTTACTATGGATCTATGGATGACAGAAGATCTGTTAGACAATCACTTCTCTATGATAATTATGATGACTACAATGTCATTGTTACTACTTATAACATGGCCACTGGTAATGTTGAAGACAGAGCTCTGTTTAAGAAACTAGATTTTCATTATGCTATCTTTGATGAAGGACACATGCTGAAAAACATGTCGTCCATGAGGTATCAGAATCTCATGAAAATACAAGCTGAGAGACGTCTTCTGCTGACTGGGACACCATTACAAAACAATCTCTTAGAGTTAATGTCACTCTTGTGTTTCGTAATGCCAGAGATTTTCTCAGGAAAGACGGAGCATCTCAAAAAGATGTTCTCTTTGATCACAAGATCTGGTGATGAAAAAAGCAAGTACAGTGCTGAAAGGATAGCTCATGCTAAACGAATCATGAAGCCGTTTGTTCTTCGACGTCTCAAGTCAGAGGTTCAGAGACAGTTGCCCAAGAAATCTGAAGAGTTAATAAGATGTGAAATGACAAACGATCAAAAAGAAAATTATGACTATCTAGTGAAAAATTTCTCTCAACGAATTAAAGAAGAAGGAAATGACATTATGAAAGCTGGTGGTGCCTCCATGTTGATGCAGCTGAGAAAAATGGCCAATCATCCTCTCTTGTTACGCAACCATTTTACAAATGAAAAACTCCATATCATGTCAAAATTGATTGCAAAGGAACCATCACATATTGAAAGGGGAGCCTTACCAAATTTGATTTTTGAAGATATGACAGTTATGCACGACTTTGAAATAATGAATCTATGTGACCATTATAAGAATTATATAGGAAAATTCCAGTTGGACAAGTCAATGATTGGACAATCAGGAAAATTTATAAAATTAAAGGAATTGTTACAAGATCAAAGAGAAAAGGGAGAGAAAGTTTTGATATTTAGCCAGTTTACTATGATTATGGATATCATGGAAAAATTCCTGAAACAGCTCAACTACAAATATCTACGAATGGATGGCCAAACTCCTGTTACAGAAAGACAAGATTTGATAGATAAGTTCTCAAATGATGATAGTCTGTTTATCTTCATGTTGTCGACTAGAGCTGGTGGTATGGGCATCAACTTAACTGCAGCAAGTACTGTTATCTTACATGACATAGATTTTAACCCTTACAATGATAAACAAGCAGAAGATAGGTGTCATAGAGTGGGCCAAACAAGAGAGGTGACCGTTATACGATTGATCAGTGACCATACTATAGAAGAGGCCATGTTAAGATGTGCACAGGAGAAATTAAAATTAGAAAAAGATATAACAACTGATGAAGGTTCTGATACAGACAACCCTAACGATGTAGCATCATTGTTGAAGCAAGCATTAACTGATGGCACTGTTTGATGAAGGTTGAATATTAGGTATATCGTCTGTATTGACATGTTGAAGAATGACTCATCATCAATGATTAGATATTATCAGTAGAAACTGTATTGGATCTGTGTATTAACTTGTGAAAAAAATTGTTAAATGGAATTAAAATGTTTGGTTTTTGTCTCACCTTTTTGTAACTGAAGTCGAGACATAGCTTTTCAAATGCCAAGCCTCTCAAACGGTCATAGGCAATCTGATCGGCTTCAGCTTCTCATTTAGGCATTATTTTCTGTTAAGCTACCATACAGTATTATTCTGGTTCATGTAATGAAATGTAAATTGTTTAAATGATGATTATGGGAAAATTAAGTAATTTATTAAATTGAAAAAAAACATTTTATTTTACAAAATGAAATTGTATTTGATTAGACTTCTTTCTATGGCATATTTTCTGGTTTTATTTAGATATTATACAATTATCACCCTTATTGGAGTGTGACCCGACGGTTTGTCTACCAGAGAAAAGTAACTTTTCTAGGGGAGACAAACCGTCGTCGGATCACACTCCAACAAGGGTGATAATTGGTATATTATATAGAATATTTTTGCATCAGACACCAAGTAATAGAATACCTACGGCTTTGCGAAAATATTCGATATAATATATAAAATTTCTTCTTCGCCTACAGCGACAAACCTGTCGTTTGTTGTCTGTTGAATCAAGGGAAGTAACTATAATTAGAAACATGTGAGACTTGCGTGGGAATTTCCTTGGGATTTCCTCGTGAGCGGTGGACCTTACGATTAGCGGTTGACCCAACGAATGGATAAATATCATGTGACAGTGTTTTATCAAATCAGATTAAAGATATTTATATGAGTATATAATATAGTACTATCCTGACTCTTGTAAGTAATGAAATAGGGTTAGAAGTTAGGGTTATGGTGATTAATGTCACTCTCAACAATATTTCAGTTGTATCGTGACTGTCAGTTTTATTGGTTGAGGAAAGAAGAAACCGGAGTACCCTGAGGAAGCCACTGACCTGCCGCAAGTCACTGACAAACTTTATCACATAATGTTGTATCAACACGACCACGACAGCCCCTTGTTATGAAATAGAAGGCCTATTAAAGTGTTTGTATACATGTACATTTGTATATTCATTAGGAGAAAAAAAAACAATTTTAAAAACACACAATTTTTTATTGAAATTTTTTTTAATACCACTTGGACTTAGTTAAATATTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02845	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14439	SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	EC:3.6.4.12	Signaling pathways regulating pluripotency of stem cells	ko04550	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28677-4.10 global RNA-seq network