Gene detail

Detailed information of Bpl_scaf_28638-0.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28638-0.17	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Bpl_scaf_28638	78325	101308	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_28638-0.17

ATGTGTATTGATAATAAATATTTTGAAATCTTCAGGGCATTGGCACAGCTTTGGTCTAAAACTTCCAATAAAGAGCCTACAAGTCCAAGTAAACAGCAGTTACCTCCCATAGAGAAGCAATCTGTAGACACATTTAATGATCAGAGTGTAGCTCCAGGAGAGGAACCTAGGAAGTTTGATTCTACTGGAATGTTCCACTGGTGTCCTAATAGAAAACTAGAGAAATCTGTCATGGATCGTGACGAAGCTTCCATGACAGTTTTGTGTAACCATGTTGTTGTTTGTTTATTTGCTGATGACAAATCACCGTTGATTGGATTACGTAATCTTGTGATGCCACTTCGTGCCAGCAACTTCCACTACAAAGAATTAAAGCATGTTGTTATTGTTGGCAATTATGAATATTTAACCAGAGAATGGAAAACATTGCAAAATTTCCCCAAATTATCTATATTACCTGGATCTCCATTAAATCGTGCCAATCTTCGTGCAGTCAATATAAACCTGTGTGATATGTGTGTTATTGTATCTGCTAAGGACAAGAACTTAGATGATCCACATTTAGTAGATAAAGAAGCAATTTTGTGCTCGTTGAATATTAAAGCAATGACATTTGATGATAGTATAGGACTATTACAAGCTTCAGCTCAAGGGGGTGGGGTCGGAGGTTTCCTGCCACCAGGATTTTCACCCATTGGTAGTCCAGCAAAACAGTCAAGGAGGGGCTCAGTATGTGGGTCAAATGTACCTCTTATTACAGAATTAGCTAATGATTCTAACGTACAGTTTTTAGATCAGGATGATGAAGATGACCCAGACACTCCACTTTATATGACTCAGCCTTTTGCCTGTGGTACAGCATTTGCTGTTAGTGTATTGGACTCTCTGATGAGTACAAGTTACTTTAATGATAATGCATTAACCCTGATCCGTACCTTGGTGACGGGAGGAGCCACCCCAGAATTGGAACAAATTCTTGCTGAAGGAGCAGGGATGCGAGGAGGATATTGTACCCCAAGTGTCTTAGCTAACAGGGATCGTTGTCGAGTTGCTCAGCTATCACTTTTTGAAGGACCACTCTCAGGGTTTGGGGTAAGTTTTGAACATAAACAACAATTTACAATTAACATCATATTCCGTGATACCAATGAACTCCAGACTAGTCCGTCATCTAAACGATATGTGATAGCTAATCCTATGGCAGACTTTAAATTGTACTCAACTGATCAGGTGTTTTGTCTTCTTCCTTTCAACCAACAAACGACAGAAAAGGGAACGAATCCACCTCATGAATCTGAAGAAATTACAGCATGAAGATAGTTTTTCAGAATATCAACGATTAATCTTGTGTTTTAATTAACTTGACAAATGTGTGTTGATATCTATTGATAGTAAACAATCTATTGATGAACATTGTAGCAGATGCTGGACATTGTAAAAGCATGTAAAAAAATAGAGCAGTTCCATTCAGTAAAGTAAGTTTGTGTGAAGATCGTTGACACAGTATGAAGGCTGATTCCATATTGTACACACTGTTACTCTTGATTATAAGATATAGTTAGTAACAGGTTGACACAGTATGAAGGCTGATTCCATATTGTACACACTGTTACTCTTGATTATATGATATAGTTAGTAACAGGTTGAGATTACAAAACAGCATTGATGCTTACTAGACTGTAGGTACAGCAACACACAAATTATTTGACAATTACATTTCTGTATTTATTTCTGTATTTTTTTATTGATCTGTTGTGCTAACCTATAATGTGTATGTTTGTTTTATTGATTCTGAGCTACCAGTAAATGTTAGAATGTTTTTTTTATTATTTATATGTTAGCTAAAGCAGTATACAAAATTAACTGTATTTTGAAGCTTTTTTCATGTACTTTAGTTTTATCCAACTGACATTTGAATAATAACACCGTCTGACAGAAATACAGAATGTATATGTCAAAATAAATGCTATTGTTAAAATGGGAACCACTTGTACACGTAGTATGCCTTTCATGAAAAAGGGACATTTTGACATATTTTGTTTGGGTGAAATTGTATTTCTGTAATTTTTTAAGAAAGTATTTTTTTTTTTCATTTCCGAAATATATTATTTTACTTTTCCACAATTTACCTAGAGTTACTTGAAAATAGACTGTAAGAACTCTGTGTTTGTTATACAACTTCAAGCACACTACTTCTTCACTCATTTTAAAAAGTGACAACAAAAGAAGTTGTGGTAAAATCTTGCTCAGAATCCTACTTCCATCTCCGTGTGGTGAACATGGAACAACAGGAATGGATAAATAGTTAAAATTTGTGGAAATGAAAATTTTTTAAATCGTTGGAAAGGTATTTTTTTATGAAGAAACATCATATTAAATTATGAATTATGAAAATGCAAAGCATTGATTTGTTTCTTAGTTATAAAAACTTATAGACAATTAATACTCACAATTTTAGATAAATAAGAATGGCAGGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21014	Slowpoke_C	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047871	Family	Calcium-activated potassium channel slowpoke-like	Interproscan
IPR048735	Domain	Ca2+-activated K+ channel Slowpoke-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10027	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005267	Molecular Function	potassium channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045211	Cellular Component	postsynaptic membrane	Interproscan
GO:0060072	Molecular Function	large conductance calcium-activated potassium channel activity	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04936	KCNMA1; potassium large conductance calcium-activated channel subfamily M alpha member 1	-	cGMP - PKG signaling pathway	ko04022	PMID: 28812709
			Insulin secretion	ko04911	PMID: 28812709
			Renin secretion	ko04924	PMID: 28812709
			Vascular smooth muscle contraction	ko04270	PMID: 28812709
			Salivary secretion	ko04970	PMID: 28812709
			Pancreatic secretion	ko04972	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28638-0.17 global RNA-seq network