Gene detail

Detailed information of Bpl_scaf_28609-6.25 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28609-6.25	POLY [ADP-RIBOSE] POLYMERASE	Bpl_scaf_28609	577801	592111	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_28609-6.25

ATGGCGTCAGTTGTTCAGAAACACCAACCAAGGGTGTTAAAGAAATATGACATTCAAATTGTCCTAGAAGCCATCAAGTATCTATGTGAAGATGAAGACATGTCTGAAACGATTGAAGACGTACAAAATGAAGTAAAAAGACGTATTGGGAGAACTTTTAGATTTTCAATGCTTCCTCTGTTCAAGTCATTCCCAGATAATTTTGACATTGAAGATGAGGGTGGTTCATCAAAAATAAGAGCAAAAACTAGACTTGAACTTTGTCCCTCACACTGCGGAAAACAGAGCAATTGTGACGGGCTGTGCCATAAAGTACATGTTTGTAAATTCTATTTGTTATCAGACTCCTGCAAGGCCAGCCGAAGATGTCAATATGGTCACGACTTCGCATCTAGTCATAACCGAGAATTACTACGAGAACATTACTTGTACGAACTAGACATAGAAGCGCTTAGAAACGTATTCAAGAACCCTAAAAGTCGCTGCCAAGTCACAAGACCACCTTTTTGCAAATTGTATAGTGGTGGCACCGAGTGTAGAAGTGAACGTTCTGGTAACTGTCCGTTCCTGCATCTTTGTAAGTCTTATGTTACTGGGAAGTGTTCGTTTGGAAGACGATGCAGGAAAAGCCACGACATGTGCCACCCTGCAGTTAAAGATGTTCTTGAAAAATATGGTATTGACACAAAGAGACGCCCTAAAGATGTTCTAACTGATGTAAAAACATGCTTTGCTGAGGAAACAGGAGACAAGGATGCAGAAAGTTACAAATCCTTCGAATCTGCAGTATCGGAAAGACGTACACCATTTAAGCCTACCAATATGACCAGATCCAAGTCTAATCCGTGCTTATTTACGGGGATGTCTGCATTGTCCTTTTCCTTCGGAGGAATAGAGAGCACCGAAGAGAAGAAAAATGACGGATGGGGTTTTGAGTGCACAGAAGACCGGAGAAAACAGTCTGTAGATATTTGTATTTACCATCTTCGAGGAAAATGCAGATATGGGGATCAATGTTGTGGACAACATAAAGATTGTATGTACCAGTGGCAGTTCGCAAACGGCGGTGAATGGACGGACTTTAAACCCTCTTCAAATATTGAAATTGAAATGATGTATTGTGATGTCAACAATACCGACTGCCATGTTAAATTTGGAAGACAGATTAATATGAATGTGGATTTCATTCAAATGAGAGCAAAGAAAAGAGGAACATTACACAATGTACGGAGATTATCAACAGAGTCGTCAGCAGTACAGAAGTTTCAGCCATTGGCAACAGAATACAAATGGTACTGGCAAGATCAACATGAACGATGGATTTTGTACGGTGAAGAGAACGTAACAGGATATGCAGCCATGTTGGATAGTGACAGCCTCGAGATGAACTACCAGGAAAACCCCTCTGGTCAGATGAAATTTAAAACCAGTGGTAATGATTACATGGTGGATTTTCAGAGAATGGTACAGAAAAATGTGGTCCATAGAACAGAGCGAGATGTTCGTAGACGACCAGTGTTTGTTAATTCTGAAGAAATTGAAATCAGGAAGAAAAGGTCAGCCGACACTGGGACAACAAAGACGTCATCATCATCCATGGTTGTTCCAGCTCCACTTGCTCACGATCCTACTACCTACATACCTACATCCTGGGACTTTGGTAAACGAAAACGAGCAGACGACATCAGTGGTCATTTCAAAATGATTAACTGTCAAGCTACAAGTCCAGAAGCAAGCCAACTGAAGAAATTATTTTTTGAAACAATGTCGAAATCTTTCAGTATTGCGTCCATTAAAAGAATAGAAAATGGAGAACTTTGGATGAATTTTGTTAGCTATTTTGCGAAAATGGCACAAACGGCAGACAGTTATACTGATTTTGGTGTCAAGAAACATATGTTTATTGTTCGTGTGTTAGCTGGTGATTTTGCCCCCGGTGAAACAACATTTGTTCGTCCTCCACCCATAAATCCGAGGGATCCATTTGAACTGTACGACTCGTGCGTTGACAGTGTACGGAATCCAGATATATTTGTTATATTTACATTTGATCAAGTATATCCAGAATATGTTATAGAGTACCAGAGGATCAAGAAATAA

Transcript

Bpl_scaf_28609-6.25

TTTTATAGATTATATCACGTTTATTTGGGCCTATGATAATCATTACAGATAAACACCTTATCCGTGTTTACAACATTTCACCTAATCTGACAAGAAAAGAGGTAGTTTGTTTATACTTTCTAAAACTGAAGATTAATAGTTAATGAAGAAAATATGGCGTCAGTTGTTCAGAAACACCAACCAAGGGTGTTAAAGAAATATGACATTCAAATTGTCCTAGAAGCCATCAAGTATCTATGTGAAGATGAAGACATGTCTGAAACGATTGAAGACGTACAAAATGAAGTAAAAAGACGTATTGGGAGAACTTTTAGATTTTCAATGCTTCCTCTGTTCAAGTCATTCCCAGATAATTTTGACATTGAAGATGAGGGTGGTTCATCAAAAATAAGAGCAAAAACTAGACTTGAACTTTGTCCCTCACACTGCGGAAAACAGAGCAATTGTGACGGGCTGTGCCATAAAGTACATGTTTGTAAATTCTATTTGTTATCAGACTCCTGCAAGGCCAGCCGAAGATGTCAATATGGTCACGACTTCGCATCTAGTCATAACCGAGAATTACTACGAGAACATTACTTGTACGAACTAGACATAGAAGCGCTTAGAAACGTATTCAAGAACCCTAAAAGTCGCTGCCAAGTCACAAGACCACCTTTTTGCAAATTGTATAGTGGTGGCACCGAGTGTAGAAGTGAACGTTCTGGTAACTGTCCGTTCCTGCATCTTTGTAAGTCTTATGTTACTGGGAAGTGTTCGTTTGGAAGACGATGCAGGAAAAGCCACGACATGTGCCACCCTGCAGTTAAAGATGTTCTTGAAAAATATGGTATTGACACAAAGAGACGCCCTAAAGATGTTCTAACTGATGTAAAAACATGCTTTGCTGAGGAAACAGGAGACAAGGATGCAGAAAGTTACAAATCCTTCGAATCTGCAGTATCGGAAAGACGTACACCATTTAAGCCTACCAATATGACCAGATCCAAGTCTAATCCGTGCTTATTTACGGGGATGTCTGCATTGTCCTTTTCCTTCGGAGGAATAGAGAGCACCGAAGAGAAGAAAAATGACGGATGGGGTTTTGAGTGCACAGAAGACCGGAGAAAACAGTCTGTAGATATTTGTATTTACCATCTTCGAGGAAAATGCAGATATGGGGATCAATGTTGTGGACAACATAAAGATTGTATGTACCAGTGGCAGTTCGCAAACGGCGGTGAATGGACGGACTTTAAACCCTCTTCAAATATTGAAATTGAAATGATGTATTGTGATGTCAACAATACCGACTGCCATGTTAAATTTGGAAGACAGATTAATATGAATGTGGATTTCATTCAAATGAGAGCAAAGAAAAGAGGAACATTACACAATGTACGGAGATTATCAACAGAGTCGTCAGCAGTACAGAAGTTTCAGCCATTGGCAACAGAATACAAATGGTACTGGCAAGATCAACATGAACGATGGATTTTGTACGGTGAAGAGAACGTAACAGGATATGCAGCCATGTTGGATAGTGACAGCCTCGAGATGAACTACCAGGAAAACCCCTCTGGTCAGATGAAATTTAAAACCAGTGGTAATGATTACATGGTGGATTTTCAGAGAATGGTACAGAAAAATGTGGTCCATAGAACAGAGCGAGATGTTCGTAGACGACCAGTGTTTGTTAATTCTGAAGAAATTGAAATCAGGAAGAAAAGGTCAGCCGACACTGGGACAACAAAGACGTCATCATCATCCATGGTTGTTCCAGCTCCACTTGCTCACGATCCTACTACCTACATACCTACATCCTGGGACTTTGGTAAACGAAAACGAGCAGACGACATCAGTGGTCATTTCAAAATGATTAACTGTCAAGCTACAAGTCCAGAAGCAAGCCAACTGAAGAAATTATTTTTTGAAACAATGTCGAAATCTTTCAGTATTGCGTCCATTAAAAGAATAGAAAATGGAGAACTTTGGATGAATTTTGTTAGCTATTTTGCGAAAATGGCACAAACGGCAGACAGTTATACTGATTTTGGTGTCAAGAAACATATGTTTATTGTTCGTGTGTTAGCTGGTGATTTTGCCCCCGGTGAAACAACATTTGTTCGTCCTCCACCCATAAATCCGAGGGATCCATTTGAACTGTACGACTCGTGCGTTGACAGTGTACGGAATCCAGATATATTTGTTATATTTACATTTGATCAAGTATATCCAGAATATGTTATAGAGTACCAGAGGATCAAGAAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02825	WWE	WWE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR004170	Domain	WWE domain	Interproscan
IPR037197	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR051712	Family	Mono-ADP-ribosyltransferase and antiviral protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45740	POLY [ADP-RIBOSE] POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0009615	Biological Process	response to virus	Interproscan
GO:0032481	Biological Process	positive regulation of type I interferon production	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061014	Biological Process	positive regulation of mRNA catabolic process	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15259	PARP7S; poly [ADP-ribose] polymerase 7/11/12/13	EC:2.4.2.30	Non-coding RNAs	ko03100	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28609-6.25 global RNA-seq network