Gene detail

Detailed information of Bpl_scaf_28270-1.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28270-1.15	NINEIN	Bpl_scaf_28270	46977	114245	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_28270-1.15

ATGTTGAGTGTTAGGCATAATGAAGTTGATGCTCAGACCAGACATCGGGAACAACCCCTGTCTTTAACAGACAACTCTTCTGATGAAGAAATGGAAAAAGATACTTTTGAGGATGAAGGTGTATTGAATCTAAATCTATCTGAGTTAGAGCAGGTCCAGGACTTTACAACAGGGGAGGACTATCTGCGTAGTATATGGAAGAACAATGGAATAGGACAAGATGGGTACATTGGACTGGAGGAACTAAATACTGTCTGTACTTATATTGGAATGGAAGAAATGAATGCTGAGGAGTTAGAACAGCTATTCACTAAACTTGATGCTGATGGTGATGGTAAGATCAGCTTTGATGAATTTATTGGTGGATTGTTCCACCATTCCAATTTATCCACCATTCCACCAAGATCTCATGGTTCCACAACTCCTAGAGCTAATACACCAAGAGCACATTCTGCACAGAAAAAAGTAAAAGTACAGAGTGGAGATGATAGATCTACTCCTTCTATTATACCTGGGAGTGGTGTGTCAGGTCTCTTTACAACAATAGATCCAGACAATACAGGGTTTGCGATGCCTGATACAATTATAGATTTCTGGGAAAAGAACAATATACAAAATGGTGCTGATATTTTAGTGGCACTTGGATTTGACCTTGTAACAAAGGTCAACCTGTCTGACCTGTCTGTTGGATTAGAACATGTTTTAATCAATGCAGATGATCAGGATGCAATATATCAAGCTGCACTGTGTTCCTGCCAGCAAGAGATTAGACAACTCAAGTCTTTAACAGAGCAGTATGCTTGGGCTACAGATAAACTGAAACAAGATCTAAGTGAGGCTAATGCCAGAAATTCTATGTTAGCTAAGGAAGTAGATGAGAGACATGCTCATTTAGAACAATCTTCAGAGAAGAAACTCATAACTGTAGAACGCAAATATCAAGAACAGATTAAAGGTCTACAATCCCAGTTGGATGATGAGAGAGAACAATACACAACACATACTGCCAAACTGAAATCTAAAATACACACTGAAATGGAATCCCTTAAACAAGAGGAAGGCAGACTTAGAGACAACTTAGCTCAAGCTCAGAAGGAATTAGAAAAACTGGAATCAGATTTATTTGAAACCACAGAAAAACTAGCAGAGACAGAAAAGCATAACAGCAGACTTCAGAGAGAACTTGAAGCCACTGATGAACTACAGAGAAAGTTTGATGAGTTGGAAAGTAAAGGAATATTTTTACCAAACCAACATAGTTTATTAGACAGAATGAAAGAAATGGAAGAGGAAAACAAGGATTTGAAAGACATAAATGATGAACTAACAGCTGAAATAGAAAGTGTTAAACATCTGTTGCCTAATATTAAAGGAAAGGCTGGTACTCCATGTGATTGGCCATTATCTAAGATTCCTATCAAGGATGGATCATTCCTGTCGGATTATATCAAAACAAAGAGGGGAAGTGCTAGGTCCAGTGTTTCAGATATATCAGATGATGAGAGTGTGACAGGTATTCCATGTCATCCTGGACGTGTAAGAAGACGGCTACCACCAGCCCCAGATGATGATGATGCCAGTAGTGTATGTAGTATGCAGAATGATAAAGATTACATTGATGTACTTAAGAGAGAAATGTATGATACCAAACTTAATTTTGAAAGAGAAAAGAAGGAAATAGATCAAGCCTATAAAATGGAAATTACTAAGATTGAAGAGAAACAAGATGAAGAGAAAGCAGAACTACTAGAGAAGATGAAAAATGATCATGAAAAAATGAAACAAGATTTCAATAAGAAGATGCAAGATAAATTAGCTGAACATCAAAAAGAATTACAGACAGAATATGTGCATGAGAAACAAGACCTGATTGAAAAATACGAGTCGCAGATTAACCTTCTGAAACAGTCGTTTAAAGAAGAAAAGAAAAACTTAGAAATTCAATATCAAGTGGAATTGGATAGTCATATAAATAAAGTGAAATCAGAATATGAAAAAGACAAAACAGACTTAGAATCCTATCTGACAGGACCTAGCTCTGCCTTCCAGAGATTACAAGAGGAAAATTCAGAATTAAATGATCAAGTGATGTACATGAAGGATGAAATGGAATCTCATCAACAGGAGATGAATGAGGAACTGGAAACTGCCCTATCTAATACAGAAACTGCACTCAGACAACTGGAGAAGGAGAAAGTGGAACTTAGTATACAACTTAATACTCAGAGAGAGGAATCTGAACAAAGGTTGAAGGAAGATAAATCAAATCAGGAAGCAATGTTTGAGAAAGAACTACGAAAGATGAAGAAAGATCATCAAAAAGAACTTGAGGAGAGATTAGAAGAACAGAAGGTGAACATGGAAAATTCATACAAAAAACAGAAAGACAAACTCTGTAATGCTTATGAGACTGAACATGAACATGTGGTTCATAGATACGAAGATGAAATCAAACTACTGAAGCAGAGAATAGAGGGCCTTTTGAATAAAACTGATGAAGAACGAGAAGTCATTGCTAGGAGGTTTGAAGAGGAAAAAGAAGTAATGGAAGATGAGATTGCAAGAGCCATAAGACAAGAATTAGAGGAGGAAGTAATTGGTCAGATGGAACAAGTAAAAGAAGCCTTCGATGAAGAACGTAGTAAACTACAGCAACAGTCACAAATGTTACAGGATGAGTTAGAGGAAGTTCAACGTGATCTAGATAAAGATAGGAACAACCGGAAAAAGATGGATGAAATGTCAAGGACAATAAATAATATGCATAGAGAAAAAAGACTGACTGATAAAACGATAGAAGAACTACAGTCCACTTTACAGACAACAAAACTGGCCATGGAGAGAAGGATTGGTGAATTGAAAGAAGAAAAAGAAGGTGCAATATCTGCTGTCAAAACAGAGTTTGTTCAGTCAGCAAAACAATCAGGCAAAGACAAGGCTGCTTATGAGGAAGAAATTAACACACTGAAGAAAAAGATAACTGAATTGGACAAAGAGAATCAGAAAATGCATGAAGTACAGGAGTCTATGGAGACCTTAGAAAAGAAATTTAACCAGCAACAGGACCATGTTCATAACTTACAAGGACAGTTAGATGCCTATAAAACAAAGATCATACCTCAACATGCTCAGAAAAAATACAACAATAATGTGGAGAAGAACAACAATAAAGAAATAAAACTAGAAGAAGATCAACCTGATGGTCTTCAGAAAGAAAAGGAGATTTTGATGGCACTGAAGTTGGAGAGGGATAGATTAGAGACAGAATTAGAAACTGTCAGTACTAAGCTTGTAAAGGCCAACAGTGATCTAGCCCAGAACCAAACACAACATGCAGAGGAAATGAAGAAGTACCACAATAGCAGTGGTATAGATATACACAACTTTACTCGTCTACAGATAGATCTTGTTGATCAACAGAGACAACTCAGAGAATTACAGGAATTTATTGAGGCCAAAGAAAATGAAAAGAATAAGAGGTTTAAGATTAAAGAGGAAGAGATGAAGAAAGCCATAAAAGAACTGGAAGATGATAAAAATTCTCTCCAAAGAAAACTGAGACTGACCCAACAAATGTTGGATGAACAGATAGAAAAGATCAAAAATCATTATGATGACTGTGAGAAGAGAAACGTATTAGTGGTAGATTTGTACAAAGAGAACTCGGAATTAATGGAAGCTTTGTACGTCATGGAAGAAAGGAAGAAAGATGCTGTCAGTCGTTGTTACAGAATGGAGGATCAGTGTAAAGCTCTTAAAATGATGCTCAAAAAAGTATATAATGTAGCAGTAACTTGA

Transcript

Bpl_scaf_28270-1.15

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18905	NINEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0034454	Biological Process	microtubule anchoring at centrosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16477	NINL, NLP; ninein-like protein	-	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28270-1.15 global RNA-seq network