Gene detail

Detailed information of Bpl_scaf_28209-0.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28209-0.10	GTP-BINDING PROTEIN-RELATED	Bpl_scaf_28209	26161	55056	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_28209-0.10

ATGAGTAAAACTACGAAGAAAAGGACAATGAGGGAAGGGATCAACAAAGCTAAACATAGCATGAATCCAGATCGCCCAAAAATAAAAAATGCAGGAGGTACAAATATGCGGGACAGATCTACGATCAAAAGACTTCAAATGTACAGGAATTTCAAAGCAAAAAGAGATAGAACAGGGAAAATTATTAAAGCTGCACCTTTCCAGTCATGGTTACCTTCAGGGTCTGTTGCTCGAGTGGAACCAAACAGAAAATGGTTTGGGAATACCAGAGTTATTACACAGACAGCTTTACAGTCTTTTCAAGATGAAATGGCAAAAGTTAAAAATGACCCATATAAAGTTGTCATGAAACAGACTAAGTTGCCAATTACTCTGCTCAATGAAACAGCTAAACATGCTCGAGTACATTTGTTAGACACAGAATCATTTGAAACAACATTTGGACCTAAAGCACAGAGAAAAAGACCAAATTTGAAAATGGATGACTTAACGACATTAGTTAATAAAGCTTCAACGTCAAGTGAGAGTTATGACGCTGAGAAAGATCAAGATTTAGTGAGAGAAGAACCAGAATTTAAAGATGAAAACAAGGAAGTGATAGATTCGTCAGATGTTGTTGTCCAGGTTTTAGATGCCAGAGATCCTATGGGAACCAGATGTTACCAAGTAGAGAAATACATGAAGAAAGAAAAACCTCACAAACATCTGATGTTCGTTCTCAATAAAGTTGACCTAGTACCTGTGTGGGTAACACAAAGATGGGTAGCTATATTATCACCTGAGTACCCAACTATGGCTTTCCATGCTAGTATAACCAATCCATTTGGTAAAGGTGCTATGATAAACCTACTACGACAGTTTGCCAAGTTACATTCAGACAAGAAACAGATCAGTGTAGGGATTATTGGGTATCCTAATGTTGGTAAAAGTTCTATCATCAATACACTGAAAGCCAAGAAAGTGTGGCAGTATGTTTCATTGATGAGGAGGATATATCTGGTTGATTGTCCAGGAGTAGTATATCCTAGTGCTGAAACACCAACACAATTTGTCCTAAAAGGAGTTGTTAGAATAGAAAATATAAAGAATCCAGAAGATTATATAACTGCCATGTTAGAACGAGTAAAAACAGACTACATAAAGATGACATACAGTCTCATCAGCTGGACTGGAGCTGAGGATTTTCTAGAACAAATAGCTCGTAAATCTGGAAGACTTCTGAAGAAACTAAGCAAAATCAGGGTTGAGCCAGAATTCTCAGGAGCAGACGTTAAAAATTTAGAAGAAGAAAACGAAAAGGATGATTCAGATATAGAAACAATGTCAGATGATGATGAAAATGATGAGGTAGATGAAGAAGTTAATGATGGAAATGAAGACGAAACCAAGAATATATGTGACGGTGAAGAGGAAGATGGTATCAATAACGATGAAATGGAAGATGATAATAGTGATGATATTGTTGAATGTGATAGTACTACTGACAATGACTTAAAAACTAATTCTTCTAAATTTTTGGAAGAAATGATGAAAGATAGCAAAAATGTTCGAAAAAGTGAACGCACGAAACAAAATTCAGGCAATGGAAAAAAAATTATTACGGAAGAACTGTCTAGAAAAACTACATCAGATAAAAGTAAAAAACAGACTGACAAATCTAAAAAGCAACAAGTTTTGTCAAAGGTTAAAGAGGAAAATACACCTCCAAGTAATAGTGATAAATATACCCCTAGTAGGAAGAGGCAAATGAAGACAACTGCTAGTGGAAATGGAAGCTGTGTTTATACTGTTGAAGACAGCCCATCTGTTACATGTTTTGTTTATAGTTGTATATCTGTTGTAGATGGAAGCTGTGTTTATACTGTTGAAGACAGCCCATCTGTTACATGTGTAGATGTCATATCTAATCCAAAACTTCCCAAGAAACAGAAGAAGAAAATTATGTTAGAGGAACCTGAACCAACACAAAAGTTAACAAAGAAGAAAATTAGAAAGAGAAGCAAAAACCAAGAAGATAGGAACTCACTTTTATGCTACGGCCAATGTCAAAAACAAACGAAATAG

Transcript

Bpl_scaf_28209-0.10

GAAAGAAATCCATGTGGAAAAAGATCATAATTATTTGACATACTTCAACTAGATAAAAAAGTAAAAATGAGTAAAACTACGAAGAAAAGGACAATGAGGGAAGGGATCAACAAAGCTAAACATAGCATGAATCCAGATCGCCCAAAAATAAAAAATGCAGGAGGTACAAATATGCGGGACAGATCTACGATCAAAAGACTTCAAATGTACAGGAATTTCAAAGCAAAAAGAGATAGAACAGGGAAAATTATTAAAGCTGCACCTTTCCAGTCATGGTTACCTTCAGGGTCTGTTGCTCGAGTGGAACCAAACAGAAAATGGTTTGGGAATACCAGAGTTATTACACAGACAGCTTTACAGTCTTTTCAAGATGAAATGGCAAAAGTTAAAAATGACCCATATAAAGTTGTCATGAAACAGACTAAGTTGCCAATTACTCTGCTCAATGAAACAGCTAAACATGCTCGAGTACATTTGTTAGACACAGAATCATTTGAAACAACATTTGGACCTAAAGCACAGAGAAAAAGACCAAATTTGAAAATGGATGACTTAACGACATTAGTTAATAAAGCTTCAACGTCAAGTGAGAGTTATGACGCTGAGAAAGATCAAGATTTAGTGAGAGAAGAACCAGAATTTAAAGATGAAAACAAGGAAGTGATAGATTCGTCAGATGTTGTTGTCCAGGTTTTAGATGCCAGAGATCCTATGGGAACCAGATGTTACCAAGTAGAGAAATACATGAAGAAAGAAAAACCTCACAAACATCTGATGTTCGTTCTCAATAAAGTTGACCTAGTACCTGTGTGGGTAACACAAAGATGGGTAGCTATATTATCACCTGAGTACCCAACTATGGCTTTCCATGCTAGTATAACCAATCCATTTGGTAAAGGTGCTATGATAAACCTACTACGACAGTTTGCCAAGTTACATTCAGACAAGAAACAGATCAGTGTAGGGATTATTGGGTATCCTAATGTTGGTAAAAGTTCTATCATCAATACACTGAAAGCCAAGAAAGTGTGGCAGTATGTTTCATTGATGAGGAGGATATATCTGGTTGATTGTCCAGGAGTAGTATATCCTAGTGCTGAAACACCAACACAATTTGTCCTAAAAGGAGTTGTTAGAATAGAAAATATAAAGAATCCAGAAGATTATATAACTGCCATGTTAGAACGAGTAAAAACAGACTACATAAAGATGACATACAGTCTCATCAGCTGGACTGGAGCTGAGGATTTTCTAGAACAAATAGCTCGTAAATCTGGAAGACTTCTGAAGAAACTAAGCAAAATCAGGGTTGAGCCAGAATTCTCAGGAGCAGACGTTAAAAATTTAGAAGAAGAAAACGAAAAGGATGATTCAGATATAGAAACAATGTCAGATGATGATGAAAATGATGAGGTAGATGAAGAAGTTAATGATGGAAATGAAGACGAAACCAAGAATATATGTGACGGTGAAGAGGAAGATGGTATCAATAACGATGAAATGGAAGATGATAATAGTGATGATATTGTTGAATGTGATAGTACTACTGACAATGACTTAAAAACTAATTCTTCTAAATTTTTGGAAGAAATGATGAAAGATAGCAAAAATGTTCGAAAAAGTGAACGCACGAAACAAAATTCAGGCAATGGAAAAAAAATTATTACGGAAGAACTGTCTAGAAAAACTACATCAGATAAAAGTAAAAAACAGACTGACAAATCTAAAAAGCAACAAGTTTTGTCAAAGGTTAAAGAGGAAAATACACCTCCAAGTAATAGTGATAAATATACCCCTAGTAGGAAGAGGCAAATGAAGACAACTGCTAGTGGAAATGGAAGCTGTGTTTATACTGTTGAAGACAGCCCATCTGTTACATGTTTTGTTTATAGTTGTATATCTGTTGTAGATGGAAGCTGTGTTTATACTGTTGAAGACAGCCCATCTGTTACATGTGTAGATGTCATATCTAATCCAAAACTTCCCAAGAAACAGAAGAAGAAAATTATGTTAGAGGAACCTGAACCAACACAAAAGTTAACAAAGAAGAAAATTAGAAAGAGAAGCAAAAACCAAGAAGATAGGAACTCACTTTTATGCTACGGCCAATGTCAAAAACAAACGAAATAGAAGATGATTTTAATAAAAGTATATTTATTATTATTAATGAGTGTATTATACTTACAATGTTTATGCCCAAGCCACATCAGTAGTGTTGTGACCTCTAGAGTGGTAGATCGTGGGTTGATGCACTGGGTAAAACCAAAGACTATAAAATTGGTATTTGCTGCTCTTTCAATAAGCATGCATTGTTATGGAGTAAGAGCAAAGACTGATTGGCTGGGAATCTAGGACTATAAAAATCAAACTAAGTGTGTTGGTCTAGTTTGAAGTGGACTTCATTATCATGATCATCTCATCAAAATCAAACTTCTTCTTGCCATGATAATTAAAATTTTAATATAATAAGAGATTTATTCAATGATTTTTTTCAGAATGTTTATTAAAAAAATCACTACAAAAAAACATTTATTAAAAATATATATGGTTACAAATGATAAAATAAAATCATTTAGTACAAAAAGTGTATTTCTGTAAAATAAAACAATAATAAACAATATTAAAGGGATATTAAAGCTCATTTTGATAATTTTTTTCTATCTCATGAAAACTTGCAATTGGTTCAATAAATGATATTTATGAAACATTAACCCGGTTTTTATCAATGAAACTTTGTAAAAATGATATAATTCGTTGATAATTCTGTCATATCTTGCGGTCTTTGCCTTGAATTGAATTTTTGCTTCCTGGACAAAAATTCATTTCGACCCTTTTAAGTGATATTTTAACGAAATTAGGGATTATATGGGCGTGCAAAGTATTTTTGGATTGTTTTTACAATTAAATTGAAAAGAAACAACCTTCGTCACAAGTTGAAAAAATATATGTAAAAACGAGCTTTAATATCCCTTTAAGATCTGTGTTTCAACTGCACGATCACACAGAAGAAAGTAGAGTAGAAATAAGCATGTAATCTATTGGTGAAATTTAAGATAAACACAGAAGAAAGTAGAGTAGAAATAAGCATGTAATCTATTGATGAGATTTAAGATAAACACAGAAGAAAGTAGAGTAGAAATAAGCATGTAATCTATTAATGAGATTTAAGATAAACACAGAAGAAAGTAGAGTAGACATTAGCATGTAATCTATTAATGAGATTTAAGATAAACACAGAAGAAAGTAGAGTAGACATTAGCATGTAATCTATTGATGAGATTTAAGATAAAATCACACAAAGAAATACTATAAAAAAAATGGTGTAAAACAATGTTTGAAGTCATCATTGGGGTAATCGGAAGCCATAAATTGGAAAAGGGAGACAATACCATTGCACAAAGACGAACAATGTTTGAGAAAACTAAACATTAAGAAACACAAACCCCACTAAAAACCAATGACAGCAGTTCCTGCTCAACTAGTGGCTATCATCATATTCCAAAAGATATATCAAGTTTGTTTTTCTGTTGCATGATTGCTGCACTTAATGAATTACAGATCCAGATTAGGTTTTACAGTTTCGGAGTTATGTCCCTTGAAAAAGCCAAAATCATGGTTTCTTTAAAGCACAGTTGAATTTTATTGTGTCAAAGTTGATCGAACCAGTTATTAAACTTTGAAATAAGCATGTAATCGAGTTATCCTGGATATATTAAGCTATAGACTACTACAAACAAATAAAAAATTACTTAGAGACATCCAAGAAAACGTCTTGTCAACGGTTCTACTGTATATCTTTCTGTTGTGGTATGATTGCTACATATACCTTTGAATAAAATACAAAATAAATTAGATTTTGAATAAATTTACATTGGTGAAGAGTTATACCCATTAAAATATGAGAAATACTAACAGAAATTGCATGGTTCTTCCCTATGGCAAAATGCAGATCAACTACCTAATGCAGAGTACTTTGAAGCAATTGCAAGGTGACATAAAAGTTTGCGATTTGGCACTTGCTCTTGGCAAGATTATTATAAATTCCTTTTTTTATCTCTTAAGTACTTGTCGATGCATGGATAGCACAAATTATGCAGTAAATACACATTTCATTCTATTCTTTAATAAATTGTTACAAGCTCCCAAGTTTAAATGACATTTTAATTAAAGAAATGAAACCTTAGTTGCATTGCACAGTAGTATCCTTATATTCATACTAGTTACTAGCATTACTTGATATGGAAACATTCATAAAACACATGTTTTAATGTGCAAAAGTTAGCAGACAATACCTTGTCTCAACTGCAGATATTTGCTGTACATTATGTCATTTCAGCAATGAGTTAGTTTTTTTGTATTTTATCTAACAATTAATTTGCATTCTATATAAAAAAAAAACAATCTGCTAATCAGTGAAACATCTTAAATGTATATTATAAGATTTGCTAAATGTTTAATCTTTTCTCTGATTAAATAAAAATTCACTAGTGGAAATTTCAATTCAATTGTGGAAATGAAACTGGGTTATTTGTATTTTATAATTTATCAGTGTTCATAACACCATTATCATTAACAGTGGTGACTGGTACTTCATCTTTGTTCTCTGCAATGTCTGAGTTCTCCTTCGTTTCACTTCTGCCTTCATTTTGTGTTTCATTTGTATCCTCAACTGTTGTTTCATCTGTACCCTCGGGATTTGTTTCATCACTATCTTTTGGAGAATTTAAGTCGCCATTGGTTTCAGGTGTTTCTTGTGTTTTTTCTGATGCACTATTTTCAATGTTACCACCAATGGGTTGGTTACTACCAACATAAACACCTCCTGGTCCATTGCCATGGATACTGTCTGGTCTGAAATCACTAGCTTTACTTGACCTCTCTGGTTTGTTACTATGGATACTGTCTGGTCTGGAATCGCTAGCTTTACTTGACCTCTCTGATTCCGTTGGTTGATTCTCTTCTTTCTCAAGATCAATTCCTTCACTTTCTATTACCAATTCTGCATTAGGGGAGTTTTTGTCTGAGGAAGTACAAATGTAGACGAATTATATCATTTATTATAGAATATAGAACATGCATGCGAAATGTAAAAACAGATAAACAATAATGGGTTACATCGCTACCAGTTTTGATGATTTCTAGACATTTAATTACCATGACTAATGTAGAAGTTACACATTTTTGTACACTCTGTATGGCTAGATCAGTTTCTCTTTGTCTTCGACTGAAACCCTTTCCATAGCTCTTTATTAACTTTAGGGACTTGAATACGTTCACAGTTTTCTGGAATCGAGTATTGTCCCTCTAATTTCTTCAGTGTCTCTGGCCCTAGATTGTAACATGCACAAAAATGTTGCAGGGTTAAAACGGTTCCATCTTGATATTGTGCCATAATGTCAAACGGATTTGTTTCAACTCCAAAAGACCATACACCGTCACAGAAATGACAATATAAACAGACTAATACAATAATAATATCAGTGGATGGTCGTACTTATATGACTACTAACTAAGAAGGTAGAATCTGCTAGTAGTAGACCATTATTATAGGATAGCAGTCATATATAATTGATAGATTAATTAGATTTAATAATAACTAATCATATATATCTAAAGAAATTATTAGTTATCAGAAGAGACCAGAATCAAAACTTTCTCATCAAAATCTTTGTCTGCTTCCTCTACATATGTACACCTGATCACCATAATTTTGCTGAATAAAAAAAGATGGAAGTAGGGTAACAAATTTAAAATCTGATTCAATCATTTTTCGGACTATAGAACAAATTGAAGTAATTTTTTGTAGGGTTGTTTACCATCAGATGTAACTGCTATTAAAGGTTCCACACCATCATTTGTTTTATCAATAGGTTCTTTTCTATTGACATCTTTCATAGAGGTTGCTTCTGGTCCTTTCTTCTCTCCCAGTAGATAATCTCCACTCTGATTCCGTCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF08153	NGP1NT	NGP1NT (NUC091) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR012971	Domain	Nucleolar GTP-binding protein 2, N-terminal domain	Interproscan
IPR024929	Domain	Nucleolar GTP-binding protein 2, circularly permuted GTPase motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050755	Family	TRAFAC YlqF/YawG GTPases, Ribosome Maturation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11089	GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14537	NUG2, GNL2; nuclear GTP-binding protein	-	Ribosome biogenesis in eukaryotes	ko03008	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28209-0.10 global RNA-seq network