Gene detail

Detailed information of Bpl_scaf_27343-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_27343-1.9	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Bpl_scaf_27343	115596	156772	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_27343-1.9

TGAGACAACAATGGCGTGTCATCTAGATATTTCAGGAACTTGCAATTCTGTGAAAACATTTGCTTCAGGATGGATTACTATGACGAGGGATGATTTTGCTTTACCCCGAGACTGCAGTGATATATGTGGTGGAAATGCTGTTTATCAGATTTTTCCCAATACCAGTGACCCGAACGGATTTGACGTTTATTGTGCTTTTGGGTCAGATGGAAATATATGGACGGTTATACAGAGACGCATAGATGGACAAACCGACTTTTACCGAGGATGGTCTGAATATGAAGTAGGATTTGGTGACTTAATGAAGGAGTTTTGGCTTGGAAACGAAAAACTGCATACGATGACAGAACATGATCCATATATTCTGCGTGTAGAATTAGAAGACTTCTATAACAGAACCAGATATGCCGAGTACCAATCATTCACAATAGGAAATGCTGAATCTAAATATAGACTTGATATCGATGGCTATTTTGGAAACGCAGGAAACAGCCTAGCTCGACAAAATGGGATGAAGTTCTCCACAAAAGATGAGGATCATGACATCAGTTCAAGTTCATGTGCGTTGAAATATTTTGGTGGTTGGTGGTACCAAGAGTGCCATGATTCAAATTTGAATGGGAAATATCTTGGTGGTAACCATACAAGTTTTGCTGATGGAGTAGAATGGAAAGCATGGACAGTTTATACATGTAACAGTGCTAAATATTTAACACATATGCAGTGTGATAATGGACGGTGTATACCTATTCAGTGGGAATGTGACGGAGAATTAGACTGCGGGCCGGGTGACTTTTCCGACGAATCTAACTGTGAACTAACAGACAAAGCAGCCAATGGACCGGAAGCAATAATATTGCCTGGTACATTTTCAGATTCCGAGACAGCAAGTCCGGCAACAATTCAGCATCATGGTGTATGTACAGATGGACCAATTAGACAGATGCGTTGTTCAAATGGACACTGCATTCCATTTCATTGGATGTGTGACGGGGAACCAGATTGTCGCGACCATTCGGACGAAGAAAACTGCAAATTCGATTTGTGTGACCGTGAGCCTTTGAAATACTTCCGGTGTAGAACTGGGAAGTGTATTCCCATGAGATGGCGCTGTGACATGGGATTGGACTGTGATAAATATAATGACTTCTCTGATGAAGAAAATTGTGAGAATTTTGGTCAGTGTACTCTTTCATCATTTATATGTGGGGATGGTAAATGTATACCACAAAGCTGGAAATGTGACGGTGATGTTGACTGTACAGATTATAGCGACGAGGACAATTGTGAAATAAAAGATGAGTGCGACGTTGATCCTGCTAATCACTTCCGGTGCACTATCAATGGGATCTGTATTCCGCGGCAGTTGGTATGTAATATGGAATATGATTGTGGAAAGGGCGACCACTCTGACGAAGATCAATGTGAAAAAGAAGCCGTCAAATGTTTGAAAACCGAGTTTCAATGTGCAACAGGAAAGTGCATTCCCGCGGAATGGAAATGTGATGAAGATTTGGACTGTCATAGTCTGTTCGATTTGTCAGATGAGGAAAATTGTTATGATTGAAAATATGAGAGAGGAAAAAAATAGAACAAAAATGGGCGTGGTCCTCCACATTACGTAGAAGATGTACATCATACAGTATTTAGTGGAAATTCAACAGAAACAGACTACAAATACATTTCAATATCAAGTTTAAAGATTGAATCAATGATATTGATTATAATTACTCGTTGTGGTAAAAAATAATGTTGTTTAAATGAAGGAAATTAGAATAAATACGAACTATTTGGATTTAAATATAACTGATTGTATTCTACCGCTTCATCGGTTCACAAAAATATCCCATTGATAAATATGATAGATGTGAAGAAAACTATCAACAATTATAGCCTTGTCAGGTTCATTGTCAAATGGGCATTCGTTCAGCTACATTGATAACAAAAAAAATCATAAATAATAAATCATATTTTAAAAAAGATGACTTTCATATGGTCCTATAGATGGGTAATTTGAAGGAAACGAGATACTTATGATGATCCAAGCTATCTGTGAATTATACATCATGAATGTAATTAAAATGGACCTCGAAAACTAAGTACATGTTTACTTCCTTTCTCAATTATTGCCTTTTCAGATTAATTATTGTTCAATTTTTTTCTTGTCAATGTAGTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR020837	Conserved_site	Fibrinogen, conserved site	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR050373	Family	Fibrinogen C-terminal domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_27343-1.9 global RNA-seq network