Gene detail

Detailed information of Bpl_scaf_27306-1.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_27306-1.18	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Bpl_scaf_27306	161463	180105	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_27306-1.18

ATGTACAGCTCCACGGAAAACTATGATAGAGATCTTTTATTAAAGAAAGGAAGAGGAATATTTGGAGAGAATGGCTCTTCATCTAACAAAAGAAAGTCTGAAATAGAAATAGTCCAAAATGCTTCAGTTGGCAGGAAACGAAGAAGTCCTCCTACTGATCAAAGAACAATGACCCAATTGTTTTCTCACAATTTAGATTCTGATGACAAAGAAATGGATCTTACTGATAAAGAAAATGACGAAGAAATGGATCTTACTGATGAAGAAAGTGATGAAGAAAATGAGCGTCTTCTCTTGTCTGGTGTACGTAAAACGAAATTTACATGTAGAAAAGGAATTTTTTCTTACAAGACAAAATTTGAGAAAAATAAAACTGCTGCTGTTGATCAAACAACAATGAGTCAGTTCTTTGATTACATGGATGAAGATGTCAAAACTGATGTTTTCCATGACAAGATGGTTAACAAGATAGAAAATGTGTTGATTTCTGAGAATCCTGTTACTGGAAATAGAAAGCTGAAAAAAACTGTCAAAAAGAATTTGAAAACTAAAAATGTATCAAGAAACTTGAGAGTAAGATCAAAAGAAACTAAATTAAACAATTTGCCTGTTATAGATAGTCCATGTTCTAGGGTAAAGACCAGCAGACGGCACTCATTAGGTGCCATGTCAAATAGGGTACAGGAGCTAACAGATGAAAGACATGGAAATACTCCTACAAATTTTAGAAGGAGCCTGTCTCCAGTACAGCAGAGAGGTTCAGGGACAAAGGTCAGCGTAAACACATCACTAACAGGAAGTGGGTCTCCAGTACAGCAGAGAGGTTCAGGGACAAGGGTCGGCATAAACATGTCACTTACAGGGAGTGGAAAAAAGAGCACACACTCTCTTCTGAAGCGCAATGCTAAAGGTGAAACACAACTCCAAATAGCAGCTATAAAGGGTGACTTTGAGAAGATTGAAGAACTTCTGAAGGCTGGAGCTACACCAAACACAAGAGATAATGCAGGGTGGACTCCACTGCATGAAGCTGCACATTATGGACATACACACATTGCTAAGATGTTAATAGACCATGGAGCAATGATTAATGTCCCAGGAACAGAAAATGACACACCGCTGCATGATGCACTTAGACAAGGAAAACTTGACTGTGTACGATTACTGGTATCTCGTGGAGCATGCATTTCAAGCAGAAATATTCATGGTTATACCCCTGAAGATTTTGCTGTAACAGATGATATGAAAGCTGCCTTATCTACCAACATCACAATAACACCACGACTAACAGAGGCAGTAGATGTATTAGAGTATCAGCAGCCATGTTTGTTGACCACGGCTTTGTCCAGAGAACAGAGGATATTAGTACAAAAATGTACCACTGTTATACAGGGGAGAGTTGTAGAAGATTTCTCTCCAGAAGTGACCCATATTATAACATCATGTAATAAGGATGGAATGTGTGCACGAACATTTAAATACATGTATGGTGTTGTCAGTGGCAAATGGATTGTCAATTTTGATTGGGTGAGCATGTGTATAGAGTTTGGCAGTAAAGTATGTGAGGAAGCATTTGAGATTCCTGGTTCTAGTCAGAATATTGATTCTCATGCAGCAGAGAAGGCCAGGATCAATAGGAAAAATCAGTTACCACAGCTGTTCGATGGCTACCAGTTTTATTTCCAAGGAAATTTTGATTACCCAACTCCAGACAAAGATGATCTTATTGACCTTGTGAAATTTGGTGGAGGTCAAATTCTTACAAGAGAACCAAAAGAACACCTGAGTATTGTGTCAGATATACCAATAGTACCTTATCATGCACCAACAAGTGGAACATTGTCCAAATGTAGTATATTAGTTGTCCGTGACAACAATTCAAAATTTGAACCAATCAGATCAGAGATAATGTGTTCTGTATCGGTTGCCTGGTTACTGGAATGTGTAGGAATGTTCAAAATTCTTGATTTGTGAGGCCAGACTTAAAAATATCTTTGTTTGCTGTTGGCCTACCCATACTTAGAAGGGGAGGGTAGGTAGGTAGGCTTCTTTTTTTTCTATTTTTTTGAGAAAAAATATGCATATAATATACGAGTACATCCTAGATTCTAGAACAAGTTCCGGTTACAATAAAATACAGATCAAACCGGAAAAGTACAAATCCAGATTTACCGCAAATGCAAAACGGAAAAAAAAAATTGTCAAAACTGCAATAAAAAAAATATGGGTCAACCTCAATTTTGCAGGGTCGGTCGGCCAACAGCAAACAAACCTATTTTTATTTTTGGCCTGATCAAGGTTATAACATGAGACTGCAATACATTTTCTACAAATACCGGTAACAGTCCTCCGGCTCAAGACCAGTATATCTTTGTTCAGACCTGTAAATTTGTAAATATTTATTTAGAAACTTTATAAAAATAAATTCAAGAAAATTTAATCAAGCCAGTAAATTCAAATTTTCATTAAAAGGACTGCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24171	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031436	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0070531	Cellular Component	BRCA1-A complex	Interproscan
GO:0085020	Biological Process	protein K6-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10683	BARD1; BRCA1-associated RING domain protein 1	-	Homologous recombination	ko03440	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_27306-1.18 global RNA-seq network