Gene detail

Detailed information of Bpl_scaf_27248-1.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_27248-1.16	ARGININE/SERINE-RICH PROTEIN PNISR	Bpl_scaf_27248	59363	90023	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_27248-1.16

ATGTGGGCCAATCCATGGCCAGGGGGTATGAACCCTATGATGCAACAGTCAGATTATCAGGGCATTCCTCATGGACAAATTGATTGGGCAGAACTAGCTAAACAATGGATACAACATAAAGAAACCGCTGACAATAGTCAACCAACTCCAGATACAATTAATAACGAAGTAAATCTTGGAAGACCTCCTCCCCCTCCACCCCCGATGCCTACTCAAGGGGATGATATGGAGGTGGTTAATGAAGAGGAGAATTCCCAGGAATCTAATAGTTTTCAGGGCCCACCTACTGGATGGAATTGGAACATGCAATGGAATTCACAAGGTTGGGGAATGCAACATCCTACTGAAGAAACTAAGGAAGGCACTACATTTGATTACAACCATGGTGGCTATGGTGAACAGTATGATTATAATCATGGAGGACAATTTTATGATCAGGTTTGTCAGTCTGATAATTACGGTGAAGGAGGAACAAACTATTACAAGGGCATGGGTGATCAAGGGGAATACAATAACCAGTATTGGAATGAGGAGGAACAAGCACCACAACATCACCATCATCATCATAGAGAACCACGTAACAGACGAGATAGAGATAGATTTAGACATAATGATGACAGTAATGCTTCTGATGACTCTGGCATTGATGCTGCTAAAAGGAAAAATTTACCAGCTTGGATTAGAGAAGGTCTGGAAAAGATGGAAAATGAAAAACAAAAGAAGCTGCAGAAAGAAAAATATGCATTAGAAATGAAGGAGTTAGAGAAACAGAGAGAGGAAAGAGAAAAGGCAGCAAAGGAAGCCATCATGGCTCAAAAAGAGGGTAACGACTCAGAACCTTCATTGCCCAAGAAAAGTCGATTTGAATCAGATGATGAGCTGAGTGATAGATCAAGGTCTCCAAGTAGAGATAGATCACCAGAGCCTAGTCCTATAAAGAAGCGTAGTCCGTCACCAGACGACTTTAAAACGGAGGAAGAGAAGCAAATGGAAATGATGATTAAAGTAAAGAAGACATTAACAGAGGTCCTCCTTGAAGTAACTAATAATGAAATACTAGACATCGCTAGAGATGTGTATAACAAGGCTAAAACTAAAGCTGCTAAAGCTCCAGCTAAGCAGCTTGCCAAGTCCACTGCTTTAGCATCAATCACAGGCCTCGGACTTGGTTATGGTAGTGACAGTGAGGAGGAGGAAGAGGATGAGGACAATATAGAGGACAAAGGTAGTGATGGAGGTGACTCTGATGTAGAACTAGCAGAAACTATCAGACGAAAGAAACGAGAGTTTGAGGAGAAGATGAGAAACCAGGCCATCTATGAGGAGGATGAAATAGAACCAGAGACACCAGCATATTTAAAAAATCCAATTACTGAAAAAAGTAGTAATCCTTTTGAAAGCAATTATAGTGAAATTCCAGGATTAGATGTAGAAAAAGAGGAAACAAATCCTCCTCTTGTAAACAATGGCAAATCTAAACAATCAGGGGGCAAATCTAAAGATAGAAAACTTAAAAAGAAGGAGAAAGTTAAGGGTGGGGGTTCTGGGGAAAGTTCAAGTTCAGGGAGTTCAGATTCTAGTTCTTCTGGTTCCTCTAGTTCTGATAGCTCTTCCAGTTCAAGTTCAGGCTCTTCAAGTTCAGATTCTGATTCTGAATCAGAAAATAGTTCTCCAGTCAAAAAGAAAAAAGTTCAAAAAATTCGGAAGCAGAAACAAATAGAGCATACACCAATTAGAGAGGAAAAAATACAAAGACGTGTCCAAGAATATAATGAAGACTACAATAATTCTAAGTCCAAAAAGAGGAAAAAGGAATCCAGGATACACAGTAGGGAGGGGGGAAGGTCACACAGTAGGGATAGGGAAAATGGGAGGAAGCGACGTAAAAGTCGTAGTTATAGTAGGGAAAAGGACTATCATAAGTCACATGACAGAAATCATCGTAGATCACATGACAGTGATCATCGCAAACGTCGTAGTAGTTATATTGATGAGGAGGAATACAAATTACGTGAAAAAGAAAGGCGTAAACATGAAGAGCGTAGTTATAGCAGGGAAAGGGATAGAGACAGATCTAAACGATCTGAACGGCGTAGGGAAAGTAAGAAACCAAAACGATCTAGGTCATATTCTGTGGATAGTAGTGATGGTCGTAGTAAGCATAGGAAATCAGAAAAGAGTCGTAGGAGTCCAGCGGAAGATTCCAGGTCAAGTAGACGGAGGAAGGAGGAACGTAGTGGTAAGAAGTCCAGTCGTAAACACAGGTCTAGATCAAGATCGTAA

Transcript

Bpl_scaf_27248-1.16

AGCGAACATGGCGCTTGATGTCGACAGGAATTGACTATAGAGACTCTTTATTTTGGGATGCTTCACAAGGAAATATATCAATTTAATGTATATGTCCTATGCAAGCATACCTGACTAAAATCAATATTCTACCAGTGTATTGCGATCATAGCATAAAATTTAACTGTCCAAAAATTTCCAGTTTGTCATTTGCAGGGTTACACAATGTGGGCCAATCCATGGCCAGGGGGTATGAACCCTATGATGCAACAGTCAGATTATCAGGGCATTCCTCATGGACAAATTGATTGGGCAGAACTAGCTAAACAATGGATACAACATAAAGAAACCGCTGACAATAGTCAACCAACTCCAGATACAATTAATAACGAAGTAAATCTTGGAAGACCTCCTCCCCCTCCACCCCCGATGCCTACTCAAGGGGATGATATGGAGGTGGTTAATGAAGAGGAGAATTCCCAGGAATCTAATAGTTTTCAGGGCCCACCTACTGGATGGAATTGGAACATGCAATGGAATTCACAAGGTTGGGGAATGCAACATCCTACTGAAGAAACTAAGGAAGGCACTACATTTGATTACAACCATGGTGGCTATGGTGAACAGTATGATTATAATCATGGAGGACAATTTTATGATCAGGTTTGTCAGTCTGATAATTACGGTGAAGGAGGAACAAACTATTACAAGGGCATGGGTGATCAAGGGGAATACAATAACCAGTATTGGAATGAGGAGGAACAAGCACCACAACATCACCATCATCATCATAGAGAACCACGTAACAGACGAGATAGAGATAGATTTAGACATAATGATGACAGTAATGCTTCTGATGACTCTGGCATTGATGCTGCTAAAAGGAAAAATTTACCAGCTTGGATTAGAGAAGGTCTGGAAAAGATGGAAAATGAAAAACAAAAGAAGCTGCAGAAAGAAAAATATGCATTAGAAATGAAGGAGTTAGAGAAACAGAGAGAGGAAAGAGAAAAGGCAGCAAAGGAAGCCATCATGGCTCAAAAAGAGGGTAACGACTCAGAACCTTCATTGCCCAAGAAAAGTCGATTTGAATCAGATGATGAGCTGAGTGATAGATCAAGGTCTCCAAGTAGAGATAGATCACCAGAGCCTAGTCCTATAAAGAAGCGTAGTCCGTCACCAGACGACTTTAAAACGGAGGAAGAGAAGCAAATGGAAATGATGATTAAAGTAAAGAAGACATTAACAGAGGTCCTCCTTGAAGTAACTAATAATGAAATACTAGACATCGCTAGAGATGTGTATAACAAGGCTAAAACTAAAGCTGCTAAAGCTCCAGCTAAGCAGCTTGCCAAGTCCACTGCTTTAGCATCAATCACAGGCCTCGGACTTGGTTATGGTAGTGACAGTGAGGAGGAGGAAGAGGATGAGGACAATATAGAGGACAAAGGTAGTGATGGAGGTGACTCTGATGTAGAACTAGCAGAAACTATCAGACGAAAGAAACGAGAGTTTGAGGAGAAGATGAGAAACCAGGCCATCTATGAGGAGGATGAAATAGAACCAGAGACACCAGCATATTTAAAAAATCCAATTACTGAAAAAAGTAGTAATCCTTTTGAAAGCAATTATAGTGAAATTCCAGGATTAGATGTAGAAAAAGAGGAAACAAATCCTCCTCTTGTAAACAATGGCAAATCTAAACAATCAGGGGGCAAATCTAAAGATAGAAAACTTAAAAAGAAGGAGAAAGTTAAGGGTGGGGGTTCTGGGGAAAGTTCAAGTTCAGGGAGTTCAGATTCTAGTTCTTCTGGTTCCTCTAGTTCTGATAGCTCTTCCAGTTCAAGTTCAGGCTCTTCAAGTTCAGATTCTGATTCTGAATCAGAAAATAGTTCTCCAGTCAAAAAGAAAAAAGTTCAAAAAATTCGGAAGCAGAAACAAATAGAGCATACACCAATTAGAGAGGAAAAAATACAAAGACGTGTCCAAGAATATAATGAAGACTACAATAATTCTAAGTCCAAAAAGAGGAAAAAGGAATCCAGGATACACAGTAGGGAGGGGGGAAGGTCACACAGTAGGGATAGGGAAAATGGGAGGAAGCGACGTAAAAGTCGTAGTTATAGTAGGGAAAAGGACTATCATAAGTCACATGACAGAAATCATCGTAGATCACATGACAGTGATCATCGCAAACGTCGTAGTAGTTATATTGATGAGGAGGAATACAAATTACGTGAAAAAGAAAGGCGTAAACATGAAGAGCGTAGTTATAGCAGGGAAAGGGATAGAGACAGATCTAAACGATCTGAACGGCGTAGGGAAAGTAAGAAACCAAAACGATCTAGGTCATATTCTGTGGATAGTAGTGATGGTCGTAGTAAGCATAGGAAATCAGAAAAGAGTCGTAGGAGTCCAGCGGAAGATTCCAGGTCAAGTAGACGGAGGAAGGAGGAACGTAGTGGTAAGAAGTCCAGTCGTAAACACAGGTCTAGATCAAGATCGTAACCCATGGTAACCCATGATCTGTGTTGTAATGGATGTGATATCAATAAGATAAATTAATTAGGTTTTTACCAATTACCAAAGTATCAGTTTGTATTTATCAAAGCAGGGATGAAAATAGTAATACATTGTAAGGACGGTAGTTGACAGACAATAATGTGGCTGTTTAACGTTGATTTTCTACCGAAACATCCCAATCAATTGTTCAGTACTTCTTTTGTACAGTTAATTAAGATAAACACTAAAACAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15996	PNISR	Arginine/serine-rich protein PNISR	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031937	Family	PNN-interacting serine/arginine-rich protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31518	ARGININE/SERINE-RICH PROTEIN PNISR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan
GO:0048786	Cellular Component	presynaptic active zone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13170	PNISR, SFRS18; arginine/serine-rich protein PNISR	-	Spliceosome	ko03041	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_27248-1.16 global RNA-seq network