Gene detail

Detailed information of Bpl_scaf_2723-1.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_2723-1.8	BONUS, ISOFORM C-RELATED	Bpl_scaf_2723	108176	112001	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_2723-1.8

ATGGCAGACGATGATAACAGTGACCAACCTGTTCGGAAGTCAAGAAGTACAACTCGGTTTATGGAAAGAGTCGACAGTGACGAAGATGTTGTAGTAAATCCCGACAGATTAGATGACGACAAAACTCCATTGGCTCAAAATAAAGGAAAAACAACAGACAACGAGGATATATTTGATTGGTGTGGTCTGTGTTATGAAGATTTCCAAGATCCGAGAATATTACCATGCATGCATACATTCTGTTTCAAATGTCTTGATGAATTTGTTGACCAAATTTCTGATGAAAACCAATTTCCTTGTCCTCTTTGTAAAAATGACACTAAAATACCAAATGGCGGTGTCACATCTTTTAAATCTAACATCTATGTTAAAGCAATGCAAGCCTCGCAGCAAATGGAAGAAAAGAAATCAACATGTGAAACATGTGAAGAAGCGCTAGATGCAGAAACATATTGCCTCGAATGCAAGCAAAACTTCTGCAACAAATGCGGAAATATTCATTTGAAAATGAAGCTGTCAAAAAAACACCATTTGGTAAATTCTTTAACAATGGCAGAAAGAGATGGCCGTAGAATGAAATCTTACACATTTTGCGATGATCACCGACAAGAAATAACTCTTTACTGTACTGACTGTTCTGTTCCATTGTGTAACAACTGTCAAACGGATGACCATGAGGATCACAATTTACAAGATATTGTTGAATATGCAAAAGAAACCAAGCAAGACTTGCAAAACTCAATTGAATTGCTGAACAATTATCTGCCATCACTGAGAACGAGACTTTCTGATGTACATTTTTATGAGAACGAATTTTCATCATCAAAGCAATATTTAGCAGGCGTTGTTAAAGCTCGCGCTGTTGCCCTGCATAAAGAAATTGATGATTTGTCTCAAATATTTCTTGATGAAATTGATAAAGAAGTACAAGTTGAAGAAGATCGCGTCAAGATTTTTAAATCTCGTGTGTCCGAGGCTGTGAAATTCGCAACTCAGCAAATAACAGCCGCAAACCATTACATATCGTTCGGATCAAATCCAGACGTTGCAGCTGGCCGTGATACCTTGCGTCGCCATCTTCATACGGCATTTAAGCTCCTACCAGTCGGTTTTATACCGAAAGTTGATGTTGTGTTTACTCCATTAAGCGTGGACGAGACAGTATCAAAACAAATGTTTGGACAGATTTCAAAGAAGGGAAAATTACAAATGGATCTTAAACAAGAAGCTTCATACAAAGTTCCAGGTCAGCATTTAATTAGAGGAATTGCTCCAGTATCTGGAGGTAAAGCGTGGGTTGCTTGTGGATTTGACCAAAGATTACATCTTATTAACAGACTTGGAAGTCGAATACGAACCATACGTCTTGGTAAAGAAATTGATATTGATTACGTCACATCAGACAATAACGACAATGTCTACATTTCATGTCGCAAAAACAGGTGCGTAAAAGTTTTGAATCGTGACGTCAAAATTCGTGATCTGGCCATTTTGAATGACTATCCACGAGGAATAGCCTTATCATTGAACAATGATCTCCTAATATGCGTTACAAAGTCTAGCACTTATGATAATTATAAACACTCGGATAAGAACGTTGTCATGAAATATACCCATAACGGCAAAGTCATCGTCGAATTTGAACGGTCGAAACAACACATGAAATATCCAAGAAGAATAGCAGAAAACACGAATGGCGATATTTATGTTTCTGATCACAAGGAATCATGCGTCCACGTTCTAAACTCTGATGGACGCCAGAAGAGAAAATATAACGGCACAAAAGGCAACTTAATTGGAGAACCTTGTGGTCTGACGTGTGATCGGTACGGACATGTTCTGGTTACTGACTACAAGAACCACTGTGTTCACTTGTTGGACCAACAAAGCCAACATCTATGTAATATTTTATCAGAAAAGGACGGTATTAAAAATCCATTTTCCGTTGCCGTTGATGGCGATGGATTCTTATGGCTAGGATGTAGTCTAGGAATGCTAAAGATTGAGCAACACAGAAAGCTAAAGATTGAGCAATACAGAAAGCTAAAGATTGAGCAATACAGAAAGCTAAAGATTGAGCAACACAGAAAGCTAAAGATTGAGCAACACAGATATCTAAAGATTGAGCAACACAGAAAGCTAAAGATTGAGCAACACAGAAAGCTAAAGATTGAGCAACACATAAAGCTAAAGATTGAGAAACACAGAAAGCTAAAGATTCAGCAACACAGAAAGCTAAAGTTTGAGCAACACAGAAAGCTAAAGATTGAGCAACACAGAAAGCTAAAGATTGGGCAACACAGAAAACTACAGATTGAGCAACACAGAAAGCTAAAGATTGAGCAACACAGATTGAGCAACACAGAAAGCTAA

Transcript

Bpl_scaf_2723-1.8

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11997	TRIM2_3; tripartite motif-containing protein 2/3	-	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_2723-1.8 global RNA-seq network