Gene detail

Detailed information of Bpl_scaf_27158-4.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_27158-4.2	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA	Bpl_scaf_27158	370958	398788	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_27158-4.2

TTGCTCTAATGGCACACCGTATTTTACGACATCAACGAACCGATTTACGACACCATCTTTCACACGTGTTTTGAAAACTTAAAAAGTGCCTATATTTATGTGAATGTTCATAACAGAATTGCGAAATATGTTCTGGGGAGTGACTTTAGATGGCGGGAAGAGGTATACACAGACAGTGGAGAGGTCCTTCCACCTGTCTATGGCGGCACTTGAACCAGGCAAAGTTTCAGAAAAAAAGAAAAGTGATTCATCTGTATCTGTGATGATACAACATGAAAAAGCTGAGTTTATGTTATGTACACTTGAACAAGGCAAAGTATATCAACAGCCATTAGATCTTAACTTTACAGAGGGAGAAGAAGTGACATTCTTTTTGAGTAACAATTGTGGGATAGTACATTTAACAGGTTTTCTGATCGAGGAAGATCAATATGGGCCTGACGATATAAGTGCCGAAGATTTTATGGATGCACCATCATCAGAAGAGGACTCGGAGGACGATGAAGTACCAACTTTAATTGGTGGTCAAGGTGATTTTGAGGGAAAAGGGAAAAAGAGAAAGAAAGGAAAAGAAATGGTCAAAAAGGGAAAGAAGTTGAAAATGATAGACTCTGATGATGACGATGAAGATGAAGATGATGATGAGGAGGATGACGATGAGCCAGATCTGGCAGATTTTATAGATGATGAAGCCATAGGGGATTCAGATGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGAAATATTAGTACCAAAGAAGAAGAAGAAAGAAAAAGTTGAGCAGGAAGTTCAAACACCAAAACCAAAACAACCTGAAGTTGTAGAACAAGAAGAAGGAAAAAAGAAGAAGAAGAAAAAAAAGAAAAAGAAGAATAAAGACACAAATGAACAAACAAATTCCACAGAATCGCCAAAACAACAGCAAAAACAGCCTAAAAAACAAGTGATTGCAGGGGGTGTGGTCAGTGAAGAGTTGAAAGTAGGGCACGGTCCACAAGCTACTCCAGGGAAAATGGTGCATGTGTACTACAATGGTATATTACAAAAGTCAGGACAACAGTTTGACTCCTGTAAACAGGGAAAACCTTTCAGATTCCGTCTTGGGAAAGGGGAGGTAATAAAAGGCTGGGACTCTGGTGTTAATGGTATGAAGGTTGGTGGAAAACGAAAATTAGTGATACCACCACAACAGGGGTATGGAAATACAAAACAGGGACCAATTCCTCCAGGCAGTACACTAGTGTTTGAAGTAGAATTAAAGGCTGTAAGCTGAATATTGTTACATTTTAACCACGATTTACAAAACTGTTATCTCAAGAAAAGGGGCATTTAAAATGACAATGCATAGATTTATATGAAGGAGTTATTTTGTCAGTCAGTTGAAATTGTATTGTGTAGAACGTTAAAAGCATGTCTTAGTAACCACCTTCAAATCATTAAAGAAAAATGTGTATACAATCAAACCTGTATTAAGAGGACACCTTTGGAACAAAGAAAAAGTAGTCTTTCAAGACAGGTGATTCTTAAAAGAGGTTCAATTCATATGAAACGTTCTATGACAGATGACTGCTTAATAGAGGTGACTGCATAGGCAGGTTTGACTGTATATCATGTTAATTATTATTTTAATTTCATTCCATTTAAAGATCACCATTGCAATACATGTCCGTTACTCTCGTGCCTTAAAGAAGGGTTCATTATACAGCGGTGTATTGTTTTATTAGGAAGAAGGTTTAATTTGAATTTTTTTTCTCGACAATTAGCAGAAAGTACAAATTTCAATGATATTGTGAATAAATACCATAATTACCTATGTATAATGCGCTAGATTTTACATAGATTCTTTATTTTGCAATGGGGTGTGCATTTTTAACAAGAATAATGTGTTTCGATCTTTTTTCAGACCGGGAAATCACATGTCCACCATTTTTGGTGTTTACTATTCTCAACATGCAAAGTTGTTAAATGTTTTTCATCTTTTTTAAAGTGGTGCTGTTGAATATTGATTGCGTAAAGTTGATGAATCATTTGATTATATTAAGTTAAGTTTATGTTAAGAATTATAAAAAAAACAAAAAAAACATGAAAAATCAAATCATGTGACCTTTTGTAGTCATCTGTGTATATTTTATTTTTTCTGAATAGGAATTTTCAGAGAATTGTAATCATGATTGTCTGCTCATTTTCAGAATAAGTGTGTTTTGTTAGTCAGGCTCTATTGTGTTTCTTTCTTAATACTTACTGGAAATATTTCTAGCTGTCCAATGTACAAACTCACTTTCCAAAGCTAGTTGGTACCAGTATATGTTAGTAAGGTTGTTTCAACACTGCATATGTTTGAATATACAAAATTATCAATATATACAACATGCTGAAATAATAAGGAAGGCAAATTATTTATTTTAACTTCATGTTGTGCAATTTCAAGAAAACTAACTGCTATATGACCATTGCGTTTCTGTATGTAAGTTATACATACTCAAGCAGGCCTGTACCCAGATTTTTTTTGGAGGGTGTGCTATTTGGAGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAACTGACAGTAATTCTGCAAAAAGGGGAAACGTGAGTATAAATAGCTGTGGACGGAGCAAACATTCAGTTTCTTCATTATTTTGGCCACGGTCATCTCGAGGAGGAAAAATCAATGATGCACAGTTTCATAGTTACTTTTGGTGCAAAATATTTGACAGGCATGGTCACTAGTGTTTTTCCCTACCAAACTTTTAGTCTTCTTATAAATAATATTCTTCATCAGCCTAAAACCTACAAAAATCACTTCAAATTTCTGAGGTATGTGACCTTGGTCACGTTGGTCATGTGACATACAGTTTCATAAATATGCTGTTCATATCAACAGGGATTTTTACTGATAAGCTCCGCCTCCAAATTTTGGCGGTAGGCACTACCGCAAATTCCCCTTTAATGGTTATCAAAAGGGTGTGTGAACTCACCTCCCCTGTTTACATGCCTGACATGATGGTAAATAACTTGTTATTGAATGCTTCCTTTGTTATTTTTCTTGTTTTCAGTTTCATGTGCAATCATCAACTTCTGTTGTAAAAATGGTAAAATATTTTTTTTTAAATTGTTTGATGTAAAATGTGTATTAACAGGGATGCTGATTGGCACAGGCACCTATTTGCAAGCCCATCTGGTAACAGTAAATAATTACCTGCAAACACAGATTTGTGTTTAGTATTCACAGATTCCATAATTTTACCTACTTTGCCAGTGGTTGTCACAGGTCTAATATGACAATAGGTGTTACCTAACTTGGCACGAAGTCCAATAATTTTTTTCTTTTAAACAATATTAATTCAGATATATGGACCTATGATTTTTTTTTCAAAGTAGACAGGGGGCAGATCCAGACTTTCTCAAAAGAGGAGGCAAATAGGGGGACCCAAACCCAAATTTTCCGTTGTTTTTAAAGGTTTTTCGCCAATACGGGGACCTGTAGACTGTGCACCCAGTCCAGTGTTGTATAATCCGGTACTCAACGTCTCAATTTCATAGAAAATATTATTTCGGACAGGAGGAGGAAGAAATGAAACTCTGTTTAATGATATTGTCAGTCCCATGGTATATGTTTAATAGGCTAGAACACACTGCGATTTTGAGTCATTTTTTAACATTCATAACCGGAAGCAGCTCCAGATTACTGCACATCTGAATTTCTGCAGTAACCCTGTATTGGTTTCCGGTGCAAGGAATTTAATCCATTAGTGATATGGATCTGGAATCAAAATATTGCTATTTCTACCATAGTTGGGACTTCATCCCATATTAATTGCTTTTTCTATCTGTCTGGACGACCAAAACAATTGGAGGGTACATTTTGTGCAACTGAAATATTGCTGAAAGTGGTATTATCCACCATAACACTACATATTGTACACCTATATAGATATAGTTTTTTCTCCAAAATGTGACAAGAAGAATGCTGTCAGTGTTGTACAGCAATGCATGTCCAGACCAAACTGTGGTCATGTTTCCAACACCATCAGTTCCCCTTGTACACTGCTGTGGCACTAAGAAATTTTTGTCTTCAACCCCATGAAAAATGTTGTCTGAAGAACACTTGTTAGTGATAATTATATGAAGAAAATGGATGTTAAAAGATTCATTTTATGATTTTTGTGCTGTTATTTTGGTACACATTTTTAACATTACACACATTTTTTGTTGTTATCATTCATAAAAAGATCAGGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00254	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF17800	NPL	Nucleoplasmin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001179	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR023566	Family	Peptidyl-prolyl cis-trans isomerase Fpr3/Fpr4-like	Interproscan
IPR036824	Homologous_superfamily	Nucleoplasmin core domain superfamily	Interproscan
IPR041232	Domain	Nucleoplasmin-like domain	Interproscan
IPR046357	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43811	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14826	FPR3_4; FK506-binding nuclear protein	EC:5.2.1.8	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_27158-4.2 global RNA-seq network