| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_26999-0.14 | SYMPLEKIN-RELATED | Bpl_scaf_26999 | 35596 | 76088 | + |
| CDS | |||||
| Bpl_scaf_26999-0.14 | |||||
| Transcript |
| Bpl_scaf_26999-0.14 |
| Protein |
| Bpl_scaf_26999-0.14 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11935 | SYMPK_PTA1_N | Symplekin/PTA1 N-terminal | Repeat | Interproscan |
| PF12295 | Symplekin_C | Symplekin tight junction protein C terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011989 | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR021850 | Family | Symplekin/Pta1 | Interproscan |
| IPR022075 | Domain | Symplekin C-terminal | Interproscan |
| IPR032460 | Domain | Symplekin/Pta1, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15245 | SYMPLEKIN-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005847 | Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | Interproscan |
| GO:0006378 | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06100 | SYMPK; symplekin | - | mRNA surveillance pathway | ko03015 | PMID: 28812709 |
| Tight junction | ko04530 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_26999-0.14 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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