Gene detail

Detailed information of Bpl_scaf_26582-0.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_26582-0.8	F-BOX ONLY PROTEIN 3	Bpl_scaf_26582	30577	70062	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_26582-0.8

ATGCGTAACTTACGTCTTACATTAATATTGGTTGAAGTAGGTGTATTTGATAAACCAAAAGATGGAGGGAAATATGACATAGGACAGTTATTTCTTCACAAAATATTTGGATACAGAGGTGTTATTTTGTATCCTTGGCTTGCAAAAGTTTATGACAGAGAATTGGCAACGAAAACAGAAGTTAGGGCTTTAAACGATTCGAAAGTAGAACAAACAGATGTGAAGGGAGTAAAACAGATGTATTATGAAGTTTTAATTGACAGTAGAGATTATCCACATATTTTAAAGAGAGCTCAAACAGAGGCAGTGACATTTTTAGTTCACAGACAAAACAGAGTTGATTTGTATACAATACCAGGTCCACAGTATATTGCAAAAGATACATTACATACCTGGCATGAGAATTTCCATCCCTGGTTACAACTGAATAATGTTCAACGAAATACTTCTAACAATATCCGAGTCACTGTCATACCATTTTACATGGGAAGACAAGAAAAGGAAGATAAAAACATTTATTGGTGGAGATATTGCATACGATTAGAAAATTTAGGAACTGAAACTGTACAACTTACAGAAAGGAACTGGAGTATATTTTGTGTATCAGGAACTTTGGAAACACAGAGAGGCCGAGGTGTAATAGGACAGGAGCCAGTTTTATCACCAGAACTTCCAGCTTTTCAGTACAGCAGTCATGTTTCTTTAGAAGCTCCCAGTGGTCAAATGTGGGGTACATTCAAAATGGAAAGGAGAGATGGTACAACATTTGACTGTAACATTCCTAACTTCTCCTTAGAGAGTACAACAGATAGTGATCCACCACATGGATTTGTTGTTGGCAACTGAACTGCTGTGATTACTGAATTATTTAAGTTGTCAAAGACAAAATATACATGTTGACACACACAAGATAATATGTACCAACAATCATGATAGATATCCATGTCGACTTGAAAAGTGGTGTCATTACAGGAGGAGTGAAAATTATAAGTTGGAAAACTATTGTTGTACTAACAATCATAGTTATGATAACAACATATCCTTTTAATCACGATTAAAGAAACTGATTACATTTTTATCATGATTAAAGAAACGTATTACATTTTTATCCATTATCGGGAACCCACTGCTGATCACGCTTGGATTACTCTCCAAACTGGCAAAGAAATCCTTGTAGTCATGTGATTATTTTAAAAGGCTTTAATAAATCCCACCTACTGTCTTTATAGCCAATCAAATCAAAGCTTTTAAATGTATCTAAATTAAGAAAGGAATTCCTTGCAAATTATGGGAGCAGTGGTTTTTCTTAATAGCTTTTTCATCTCAAAAAGGGGAATAACAATATAAACAAAGATTTTTATTGGTAGCTATTAATAGCCTTTTTTTTTTACGAAATGAGGATTTCTCTGTCAGTTGACCAATGGGTGTTGAGTGGAGAGTAATTGGAAAATGTTCAGCTTTGGTTTATCGATGATGATTTGTATTATAATTATTTTACATCATTGTGATACAAGAAGAAAGAAAATGCCAAATGTCACATTTTTTCCATCAATGATTTTTAAACAATCGCCAAAATCATGATTATAAATAGTACATCAAGGCCTGTTTTATGTGTTCCTCTATTGATATCTATAATAATACATACTATGTACTAGTATATCATGTTAGAATTTGAGAATGTGACTAGTACCATTTTGAGACGAGATCAAGAAAGGTAGAAATAAATATTTTATATAAGAGTAAAGTTATATTATATCATGGTACTAATAATACAATATGGAATGAAATGTGATATTTACCAGGGCAATAGTCCTATTATATAGACATTATACATACATTGTTGGAAAAATATGAAAGCAAACCTTTGACAAGCTTTTCTGTCCTGTTTTGCAGTGAGTGCAAATTAAGTTTATATTTTCCAACAATGTATGTTTATTATGTTTATTCTGCAATGATAAAAAGTCCAAAACAAGTGCCAAAATGTCTAAAAACAGCATTCTGATCATTTTTTATGGTGTCCCCAGTGACGTCCATGCTCATTCAGTTACAATTTCATGGAATTTGTTTAATATGACAGTTCTTGTGATATACAGATCTGAATTTTTCCATCTAATTGTCTCTTCACACAGATTACATAAACATTGATGCCTTCGAAGGTACGTGAACAAATTTTCTAGAATATGTGCTAAATTTGATATCTACGTTTTTATTATAGCCAACAATACATACAGTAGTTTCTGAAATCATTTTGAAATTGTCACTCGAAATTATAAAAAATCGTAACATGTAGTTGAAAAAGCTGTTTCCAGTTTTGATTACAGGACTATCATGATAAAGGAATCCTATATTTACATCAAACAAATTCGTGTTTACCTACAATACAAACAGTTCCTATCACCACTAACATGGTGAGTTTGATTCAAGCTCATGATGAGGTGTACTTGATATAGCATTATGTGGTAAAATAGCCACTTGCTGCAGGTCAGTGTTTTTCTCCAGATACTTCTGTTTGCTTCACTAATAAACTGTCCACCTGCATATATAGTAATTAGATGGAGGTACTCCTAAAATTTATGTAACAAAATAATTGATGGGACCTGGGTTCATCCCCGGTGTTTGGTTGGGTCCTTGTTGCTCATCTTATAGTTTTAGTTTTTTGTGTTGTGTTTCTTTACGTTGTTCATCTTCGTCCTGTATATTATGTGCTCAGTGTTGCCAGTTTGTCTGGATTATCCATTCATGATTTCCACTTCTGTTTTCTCTTATGTTTAGTCAATTTGAGGGAATAAACTTAGTTAAAAAATATAAAAGTTCAACATGATTCAAATGATGTTCATTATAAAAGAATTTATTGTTTAATAGTTTGGTTTCTTTATACATTTTTCAGATGTCTACCTGGGAAAAATAAAAACATCAATATATATATGAAAATCTTTCCTTATAAGTGAGCTGTACTGTACACAATTTTATTTACTCAAGCCACTCCATGAGTAAAACCTACATAGTAGAAAAGACTCAATCATAATTGTGAGTTGAAATATTGAAATTTAGTGTGATTTTTTTCTTTGGCAGATGGGGTAAATTGTGTGATACTAGGACAAATTTAATTCAATATTTGTTTTATTGCTGTACTTATTAAACTCAGTAAATTATGTACAGTAATACGTCATTATCACAATAGGCTGTTTAATCGACATTATTACATCTTATAAGTTAGGGCATTTGTGTAGCCCAGTGGCGACTTCACTCTGCATGTGAGTAAAATTACTCCTAGCTTCAGTGCATAGCTGCAGCATCCATATTTTCAACAAAGATTGGTTTCAGCTGCTTCAAAATGCAATAAGTTCAAGCTTGTACAACTATCCAAATGTGCAGAGGAATTGAATTTAGAGACATTAGACAAAGAATGAATACCACTCCCTTGTTTTCTGTCCCTGTGAAACATATTTTGTGGAAATCTCTGATACAAATCTTTGGAAGAAAACTGAATTAAAAAAAAAAATCTAGACTTTAACAAGGGGCTGACGTGATCGTATGGTTATTGTATTTACAACTACCTATGTAATCAGTGCCTAACACCACTGATGTTGTGAGTTCAAATCCCGCTAATGGCGATAAAGTTTGTCAGTGACTTTCGCAGGTCGGTGGTTTTCTCCGTGTACTCCGGCTTCCTCCACCAATAAATCTGACCACCACGATATAACTGAAATATTGTTGAAAGTGGTGTTAAACACCATAATTATAACTCATCATAGACTTCAACACACAAATAACACTGTTTACCAGTATGTTTTTCAAATCAGATTAAACTTTGATTCAATTGATTTATTGTGTTATTGCTGTTCTTTATCTTTCTTTATGTTTCTGTCCTCTTCTTTTGACAGTGTGGTATTTTTTGTTTTTCATTGTAAATTATCACTTCCCATGATTTCATATTTGCCACTCCAACAACTGTTCAAAGTGCACTAATGTTATTACAGATCATGTGACAATGTACACCTTTTCTACCTCAATAGTAGAGAGATCACACAACACGAAAACAATGTACTAAGTAATTATATATATATATATGATGAAAATATAAGACTTGAACAGATGTGAATTAACTGCATCTTTAATCGGCAGATTTTTTTTTTTTTTTTACCAATTTCATAAAAATGAAAAACATTTGATTAAAATGCTTTGTTAACAGCTATGCAAATCAATTTATATTGGTTTGATTTTGGTTGAATCTTTTCAGAGATACTATACACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04379	DUF525	ApaG domain	Family	Interproscan
PF08755	YccV-like	Hemimethylated DNA-binding protein YccV like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007474	Domain	ApaG domain	Interproscan
IPR011722	Domain	Hemimethylated DNA-binding domain	Interproscan
IPR036623	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan
IPR036767	Homologous_superfamily	ApaG domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14289	F-BOX ONLY PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042645	Cellular Component	mitochondrial nucleoid	Interproscan
GO:0070987	Biological Process	error-free translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17809	POLDIP2; polymerase delta-interacting protein 2	-	Mitochondrial biogenesis	ko03029	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_26582-0.8 global RNA-seq network