Detailed information of Bpl_scaf_26582-0.13 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_26582-0.13SMALL NUCLEAR RIBONUCLEOPROTEIN SMBpl_scaf_265827341477853+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR027141FamilyLike-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Interproscan
IPR034099FamilySmall nuclear ribonucleoprotein Sm D3Interproscan
IPR047575DomainSm domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000243Cellular Componentcommitment complexInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005687Cellular ComponentU4 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0034715Cellular ComponentpICln-Sm protein complexInterproscan
GO:0034719Cellular ComponentSMN-Sm protein complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097526Cellular Componentspliceosomal tri-snRNP complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11088SNRPD3, SMD3; small nuclear ribonucleoprotein D3-Spliceosome ko03040PMID: 28812709
Mitophagy - yeast ko04139PMID: 28812709
Systemic lupus erythematosus ko05322PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_26582-0.13 global RNA-seq network
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