| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_26490-1.11 | TRANSCRIPTION FACTOR E2F | Bpl_scaf_26490 | 146948 | 164923 | + |
| CDS | |||||
| Bpl_scaf_26490-1.11 | |||||
| Transcript |
| Bpl_scaf_26490-1.11 |
| Protein |
| Bpl_scaf_26490-1.11 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | E2F |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02319 | E2F_TDP | E2F/DP family winged-helix DNA-binding domain | Domain | Interproscan |
| PF16421 | E2F_CC-MB | E2F transcription factor CC-MB domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003316 | Domain | E2F/DP family, winged-helix DNA-binding domain | Interproscan |
| IPR015633 | Family | E2F Family | Interproscan |
| IPR032198 | Domain | E2F transcription factor, CC-MB domain | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR037241 | Homologous_superfamily | E2F-DP heterodimerization region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12081 | TRANSCRIPTION FACTOR E2F | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000978 | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005667 | Cellular Component | transcription regulator complex | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0046983 | Molecular Function | protein dimerization activity | Interproscan |
| GO:0090575 | Cellular Component | RNA polymerase II transcription regulator complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06620 | E2F3; transcription factor E2F3 | - | Cell cycle | ko04110 | PMID: 28812709 |
| Cellular senescence | ko04218 | PMID: 28812709 | |||
| Pathways in cancer | ko05200 | PMID: 28812709 | |||
| MicroRNAs in cancer | ko05206 | PMID: 28812709 | |||
| Pancreatic cancer | ko05212 | PMID: 28812709 | |||
| Glioma | ko05214 | PMID: 28812709 | |||
| Chronic myeloid leukemia | ko05220 | PMID: 28812709 | |||
| Melanoma | ko05218 | PMID: 28812709 | |||
| Bladder cancer | ko05219 | PMID: 28812709 | |||
| Prostate cancer | ko05215 | PMID: 28812709 | |||
| Breast cancer | ko05224 | PMID: 28812709 | |||
| Small cell lung cancer | ko05222 | PMID: 28812709 | |||
| Non-small cell lung cancer | ko05223 | PMID: 28812709 | |||
| HTLV-I infection | ko05166 | PMID: 28812709 | |||
| Hepatitis B | ko05161 | PMID: 28812709 | |||
| Kaposi's sarcoma-associated herpesvirus infection | ko05167 | PMID: 28812709 | |||
| Endocrine resistance | ko01522 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_26490-1.11 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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