Gene detail

Detailed information of Bpl_scaf_26452-2.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_26452-2.13	WD-REPEAT PROTEIN-RELATED	Bpl_scaf_26452	235069	261609	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_26452-2.13

CAGATTAGACACATTTACTTGACTTCCGGCTTCTCAAAAACACGTTTTCTCTTCTTGTTTTCTCATTTTGTTCACATATTTATCAGACGCTGTAACATGTTGAGAAGAGCATCGAAGAGATCTGCAAAGGAATCAGTAAAGAGTAAAGGTGCTGTCAGTAGTACAAACACATTAGACAATCCACTGGGAAGCACAAAACTACAGGAGAGAGATGCTGTAGAAAACTTCGTTTTTGGTGGTGAAGAAAACCTGATAGAAATCTTCACCGAGTCACCGTCTTTAAAGAAAAAAGAAGCCAAAAAGAGAAAAATTATTCAAGAAAAAAGAAAGCCTGTTTGGGAAGATGTTGATGACAAAACTGGAAGTGTAGAAATCACCCGATCACAGAAACCAAGCATAAGAAAGAATGAAGAATATAAAATATCAATCAGACAATATACACAACAGTTAGAAACAGAACATAATAAAGTACATTCTACACCTACCTGGGCTAGGTTACCATCAGAAGATGCTGTTCAGTCAGACAAAGACTCTGATATAGAAGATCTTTTACAGTCCACTGGAGATTATATAACAGCATCAACATCATTATCTAAAGGCACAATACAGATAAAACAATGTACTGATGCTAATAGAGACAATCCTGCACAGTGTAAATTAAATTCAGTAGAGTTTCATCCATCTTCACAAGTTATGCTGGTGGCTGGTATGAACCAGACTTTAAATCTATTCCAGGTTGATGGCAAAAATAATCCCAAAATACAGAGCATATTTTTAGAGAATTATCCCATATATACAGCCCATTTCAGTGCCAACGGTGAAGAGGTCATAATGGGGTCAAAACATAAAGGATTTCATTATTATGATATGATGGCAGGAAGAATGATCAGTGTTCCTCCAATTAAAGGTCTAGAAGAAATCAATATGAAAAGATTTATTGTATCACCTGATGGAAGATTTTTAGCCTTTTTAGGTTCCTATGGTAACATTCATCTGCTGTCAGCAAAGTCGAAAGAATGGATTCACACATTAAAGATGAATGGTAGTGTGACAAGTTTATGTTTTACTAAAGATGGTACTAGGATGTATTCTCATGGTGATGATAGTGATGTCTACATATGGGACATGAAGACAAGAGACTGTATTCACCGTTTCATTGATGATGGTTGTACCAAAGGAACGTCAATTGCTGTGTCACATGACAATAACTTTTTAGCATGTGGGTCAAAAAGTGGTGTCGTGAACATTTATGAACCGTCAGTTTGTTTGAAATCAAGGTCACCAAAACCTTTAAAAGCACTGTTAAATTTGACGACCACATGTACAAATCTTGTGTTCAATTCTACTGGAGAAGTTTTAGCCATGTCATCTAATTCAGCTGAACGAGCAGTGAAATTGGTACATGTACCATCACAGACTGTCTTTTCTAATTTTCCTGACAGACTAGATTCTAAACTACGTATTCCTATGTGTATGGACTTCTCAAGAAACAGTGGTTATTTTACATTAGGAACAAACAAAGGATTAGCTCTTCTTTATAGAGTGAAGCACTACAGTAACTACTAAAGAAGAGAAATATCACTTGACCTCATCACAGCAATGAACATTTTCATGCCAAAAACTTTAAAATCTGATATCTTGTTTTGTTGGTTAGTTCCTACTCTACCAACATATGGATGCTATCAAGACTCATGTGATACAATGACATATTTTTGCATTCATCCATGATTCCAATTCAATTGAATGATTTCATGTCATAGATGTTTTATGTCAGAAAACGTGCTAAGGAGTAGATGCTTTGACAAACATATAACTGGCCATGAAAGTCAGTTGTAACATAATTTTGACGCTAACATCACAGTTGACCTAAGAAATGGAAATGTGAAAATAAAAATATATTTTATAACATCTTTTGTGTTTCTGGAGTATTTAATGTAAAATCTTCATATCAGGCAATTAAAACATTTTTGTATATGAAACACAGAACACAATCTTATAAGATTATAGGGGGTCGTCGTGGTCATGATCATATGCTAGTTGGATTTACAACTCCCTGTGCATTCAGTGTCTAGTATCACCACTAAAGTTGTTATTTTGATACAACATTATGTGATAAAGTTTGTCAGTGATTTTCTCCAGGTAATCCGGTTTCCTCCACCACTAAAACTGACCGCCATGATATAACTGAAATATTGTTGAAAGCGGCGTTAAACACCATTAACCAAACCAATCTTATAAGATTATATAAATAAATATGTCCAATAAATCAAAGAGTACAAACTTATAATATAGGAGTCAAATATTGTCAATTTGGTGTTTAATGACAATTTAATGAAAATTATGAATAAATTAACATGTGCA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045161	Family	U3 small nucleolar RNA-associated protein 18	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18359	WD-REPEAT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034388	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14553	UTP18; U3 small nucleolar RNA-associated protein 18	-	Ribosome biogenesis in eukaryotes	ko03008	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_26452-2.13 global RNA-seq network