| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_25983-3.40 | COATOMER SUBUNIT BETA | Bpl_scaf_25983 | 276321 | 312566 | + |
| CDS | |||||
| Bpl_scaf_25983-3.40 | |||||
| Transcript |
| Bpl_scaf_25983-3.40 |
| Protein |
| Bpl_scaf_25983-3.40 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01602 | Adaptin_N | Adaptin N terminal region | Repeat | Interproscan |
| PF07718 | Coatamer_beta_C | Coatomer beta C-terminal region | Domain | Interproscan |
| PF14806 | Coatomer_b_Cpla | Coatomer beta subunit appendage platform | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002553 | Domain | Clathrin/coatomer adaptor, adaptin-like, N-terminal | Interproscan |
| IPR011710 | Domain | Coatomer beta subunit, C-terminal | Interproscan |
| IPR011989 | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR016460 | Family | Coatomer beta subunit (COPB1) | Interproscan |
| IPR029446 | Domain | Coatomer beta subunit, appendage platform domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10635 | COATOMER SUBUNIT BETA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005198 | Molecular Function | structural molecule activity | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006886 | Biological Process | intracellular protein transport | Interproscan |
| GO:0006888 | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0006891 | Biological Process | intra-Golgi vesicle-mediated transport | Interproscan |
| GO:0016192 | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030117 | Cellular Component | membrane coat | Interproscan |
| GO:0030126 | Cellular Component | COPI vesicle coat | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K17301 | COPB1, SEC26; coatomer subunit beta | - | Membrane trafficking | ko04131 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_25983-3.40 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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