Gene detail

Detailed information of Bpl_scaf_25745-2.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_25745-2.16	UNCHARACTERIZED	Bpl_scaf_25745	297407	319381	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_25745-2.16

ATGGCGCCCAACTGTCCGGAAGAAATTGATGTGTTTTCCATTCCTCATTCTAGAATGAAGGAATTAGTTCAAAAATATTTAATAATGGTTTCAGAAATTAACTTTGCAGACACATCTCATTTAACTAATCTCCTGGAGAACCTGGTCAACACATTCAAAGAATTTAAAGCTCATGAACACATTGAAAACAAGTACATCATGAAGAAGTTGAAAGAAAAACTAAAAACATTGTCAATTAGAAGCACTGCTCTTTGTAACTGCCACTCTGACAACAGACTGACAGACATGTTGGAACTGGTACAGGATGGCTACAAGTGTACACAGAAAACAGAAATAGATCGTAACAACTTTGGAAGAAAACTTAGAAAGGCTTTGGAAGAATTTACAGAAAAATTTATTCCTCATATGGAAGAGGAAGAAGAGGTTTTCCAACCAATGTTAATCAAGTATTTTACCTTTGATGAACTCAGGGAGATCAAATGTAAAGTTTTGGAAAAGCATTTTTGTTGCAGTGATAAATGTGTCAAAGCAAAGTTACTGGAAAAGACTGAATTTGCTTTAAGTGATTCATCTGATGAAGAATGTTCAGAAAAACTTGAGTTAACTAAAGACAATCAGGTGCAAACTACAGACAGGAATGTGATTGACAGAGTGCCTGATGAAGTAACAATTAAAATATTTACTTATTTAAACCCCCAGGAATTAGGAAGGTGTGCTCAGGTCTCTCAACACTGGAATTGCCTTGCTTTAGATGGAAGTCTTTGGAGAAACTTCCTACCAGTGATGTGGTCGAAAGGAGACTGGAGTTTTGTGTCGTCTATGCATGTTGAAGAAGAAGAAGAGAAATTGTTACAGAATGAGAATTCATGGGATGAAATTATTATTGATGAAGATGCAGATGTTGATGAATCTGGAGAAAATGATAATATTGAACTGGTTCATCAGATTAAAAAGGAGGCTGACATGTTGACTTGTATGATGAAGTATTTACTACCAAGAATTGGACGTGATATTAAAACAATCAACCTTGCATACAGTAAAGGTCTAGTGAATGGTTTGCTCTACAAGATCCTGTCCTTATGTCCCTTGGTAGAGAACTTGGATTTGACTCATACTAGAGTATCAGATCTGGGATTTAAAAGTCTTGGTAAAAATGGATGTGGCAGTTTACTGAAGAAAATAGACTTGACAGGATGTCATAACATTACAGATGTTACATTAGAAAGGCTGTCAAAGGCTTTAAATTCTGTACCTGTTGTCAGACATTATGAGATAGAGGAAGAGAAAAATGAAATTGAGTCGAATGAAAAAGGGATGAAATCTAAGAATATGGATGATACTTGTCATTCTACTTGTATGCAGGACCTTAACACAAGTATGATTGATAATGTGTGCAATAAAACCTCAAATGTTCAGTCCATGAACGATATTGAAGATCATTTTCAGATGAATTCATTTAAGAAACCTATAAGCTTTGCAAACCAGTTTACTAATTATGTGAAGATTGTGGCCGACTGCAGCGGTGAAGACAATTGTGATGTTGATGAAATATCTCCCAAATTGACGTTTAACGATGGGGTGATTTTGTCAGCAAACAAGAACTCTACTAATTGTTGTAGTCAGACTAATGGTCAAGAATCTTCATGCTTAAAACATTATACAGAAAATGTCTTCTGTAAACATTTAGATGCTGATGAACAGAAGACAATTAAATCTAATGGAATTGACTGTGAAAATATCTGTGATAAATTAAACTGTGGACTTGAATTCCTGAATCTGTCTGGATGTTTTCTTATTACTGATAGAGGAATAAGGGCTTTAGTAGAAAATCTGACATTTCCACAGTTACGATACCTGGACCTGTCAGGATGTGATCAGTTAACATCAGATTCACTTACAGAACTAGTGTCTGTGTGTACATTATTAGATCACCAGTTTCTGTATTATTGTGATAATATCACAGAAGATCCATACTTTGATTCAGCTAGTGGTTGTCAGAACTTGGAGTGTCCAACTAGATCGTGTTGTCGTACTAGTTACTAG

Transcript

Bpl_scaf_25745-2.16

TCGCACTCAAAGGTCACAGAAAACAATTCAAGTTGGACAATAATTCAGAGAAGTGATTTTTAAAAAATATTTTTGGTGTTTAACCCCACTTTCAACAATATTTCAGCTATATCATGGCGACCAGTTTTAGTGGTGGAGGAAGCCGGAGAGAACCACCGACCCTGGGCAAGCAACTGGTAAACTTTATCACTTGCGGTTGCGAGTCGAGTGCACCCTTTTTTGTAATTTACAAAGCCGGGTGCGAACCCACGCCGTATGGTGATAGACTTGTATGAGTTGTTAGATCTAGCGACCTAACTCACTGAGCCACCCGGGTCCCTTCAGAGAAGTGAATCGGCACAACTAAGTTAGGAATACTCATGAATGTTGTACCCTATAAATACACGGATAGCCTTATCCTTACTATCCGAATATTAGTATCCATATCGGAAAGGAAAGCTAATGCGTTATAACTCAAAGGCATATATCTATAGAAATATCTTTATGTGTGATTGAAAAGCAACAGTAACATTATCGAAAATTGTATAAAATTAAAGAATATATACAAACAACATATTTCTGTACAAAACATGCCAAATGGACGGACTGGCACTGGTAAGGGCTAGAGTATACATATATACCCCCAAATAATACATCAAAATACAATTATTGCAACGAGACTTATGATAACAAAAAGACAAACAAATGAGCAAAAACAAAAGCAAGGTATTGTTTGAGCAAATGAATTGACAATAATACTTATAAATTATCCATATGAGTTAATTAAGTAATCCATATATGATGATCGCGAAATACAAGTATTCTAAAAAAATCTTTTGTGAAACTAAAGGACAATCACAGTTCGCTAGACAAAATCAACAATTAGTAAAATGCGAAATGGTCTCCTTTGTTCATTTTCAAATTAAAAGTATTTTATCAACAACTAACACGTGGATTCGCGGGTATTCCAGTCCTGGTATAAAATGTATCGGCGACTATTTTTGTTCGTCCATGTTGTGGCTTTTTAATGTCTTCTTTCTTAACAACATCCCCTAATCGCCACCCATACTCCCAAGAACTTAGAAGTGGGAAAGAAAACTTATCTTCTGGACTTTCCTTGTACCTTGAGTGTAAATACTGATATCGTCCTTTTCCTTCCTTTGTAAATCCGTCATATAACTTATCCTTTACTTTAAGATCCACCGGTCGCATTTCTGCAACAAGTTTCGCAAGTCCCTGCTCTGGTTTGAGGTCTGAAGGCGGATTTTCAAAATTTGACTTCGTCTTGTTAAACTTTTGGGGACAGTATTCACCAGAAATTTTGTTAAAAATATCCTCAGCTGGTTTTGGTGCATTTTGAATTTTTCTTCTGGCGACTTCAGATTGTTTCGATGCGCCAATGTTGGTGTTGTCACTGTCCCGCAACTTATAATACCATTGAAGCCTTGTATCTCTCTCCTTGTTGTACGATTCTTCCAAAAACTTCTGTACTTGTGTATTGGCAGGATAACTCCGTGCCATTTTTCACTTTTAGTCTATGTTTTCACAAAAAGTAATAACTTGAATAGAATATTCTCACTGTGACAACTTACGGGACACCACTGTTCGAGCGTTTGACATTCCTATAGCAACACACCGTCACGATCTCGCGGCTCGCGATAATTTACGTGATTAAAATTAACAACAAAGATGGCGCCCAACTGTCCGGAAGAAATTGATGTGTTTTCCATTCCTCATTCTAGAATGAAGGAATTAGTTCAAAAATATTTAATAATGGTTTCAGAAATTAACTTTGCAGACACATCTCATTTAACTAATCTCCTGGAGAACCTGGTCAACACATTCAAAGAATTTAAAGCTCATGAACACATTGAAAACAAGTACATCATGAAGAAGTTGAAAGAAAAACTAAAAACATTGTCAATTAGAAGCACTGCTCTTTGTAACTGCCACTCTGACAACAGACTGACAGACATGTTGGAACTGGTACAGGATGGCTACAAGTGTACACAGAAAACAGAAATAGATCGTAACAACTTTGGAAGAAAACTTAGAAAGGCTTTGGAAGAATTTACAGAAAAATTTATTCCTCATATGGAAGAGGAAGAAGAGGTTTTCCAACCAATGTTAATCAAGTATTTTACCTTTGATGAACTCAGGGAGATCAAATGTAAAGTTTTGGAAAAGCATTTTTGTTGCAGTGATAAATGTGTCAAAGCAAAGTTACTGGAAAAGACTGAATTTGCTTTAAGTGATTCATCTGATGAAGAATGTTCAGAAAAACTTGAGTTAACTAAAGACAATCAGGTGCAAACTACAGACAGGAATGTGATTGACAGAGTGCCTGATGAAGTAACAATTAAAATATTTACTTATTTAAACCCCCAGGAATTAGGAAGGTGTGCTCAGGTCTCTCAACACTGGAATTGCCTTGCTTTAGATGGAAGTCTTTGGAGAAACTTCCTACCAGTGATGTGGTCGAAAGGAGACTGGAGTTTTGTGTCGTCTATGCATGTTGAAGAAGAAGAAGAGAAATTGTTACAGAATGAGAATTCATGGGATGAAATTATTATTGATGAAGATGCAGATGTTGATGAATCTGGAGAAAATGATAATATTGAACTGGTTCATCAGATTAAAAAGGAGGCTGACATGTTGACTTGTATGATGAAGTATTTACTACCAAGAATTGGACGTGATATTAAAACAATCAACCTTGCATACAGTAAAGGTCTAGTGAATGGTTTGCTCTACAAGATCCTGTCCTTATGTCCCTTGGTAGAGAACTTGGATTTGACTCATACTAGAGTATCAGATCTGGGATTTAAAAGTCTTGGTAAAAATGGATGTGGCAGTTTACTGAAGAAAATAGACTTGACAGGATGTCATAACATTACAGATGTTACATTAGAAAGGCTGTCAAAGGCTTTAAATTCTGTACCTGTTGTCAGACATTATGAGATAGAGGAAGAGAAAAATGAAATTGAGTCGAATGAAAAAGGGATGAAATCTAAGAATATGGATGATACTTGTCATTCTACTTGTATGCAGGACCTTAACACAAGTATGATTGATAATGTGTGCAATAAAACCTCAAATGTTCAGTCCATGAACGATATTGAAGATCATTTTCAGATGAATTCATTTAAGAAACCTATAAGCTTTGCAAACCAGTTTACTAATTATGTGAAGATTGTGGCCGACTGCAGCGGTGAAGACAATTGTGATGTTGATGAAATATCTCCCAAATTGACGTTTAACGATGGGGTGATTTTGTCAGCAAACAAGAACTCTACTAATTGTTGTAGTCAGACTAATGGTCAAGAATCTTCATGCTTAAAACATTATACAGAAAATGTCTTCTGTAAACATTTAGATGCTGATGAACAGAAGACAATTAAATCTAATGGAATTGACTGTGAAAATATCTGTGATAAATTAAACTGTGGACTTGAATTCCTGAATCTGTCTGGATGTTTTCTTATTACTGATAGAGGAATAAGGGCTTTAGTAGAAAATCTGACATTTCCACAGTTACGATACCTGGACCTGTCAGGATGTGATCAGTTAACATCAGATTCACTTACAGAACTAGTGTCTGTGTGTACATTATTAGATCACCAGTTTCTGTATTATTGTGATAATATCACAGAAGATCCATACTTTGATTCAGCTAGTGGTTGTCAGAACTTGGAGTGTCCAACTAGATCGTGTTGTCGTACTAGTTACTAGGTATGTACAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR045808	Domain	FBXL5-like, hemerythrin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006879	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0055072	Biological Process	obsolete iron ion homeostasis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10271	FBXL5; F-box and leucine-rich repeat protein 5	-	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_25745-2.16 global RNA-seq network