Gene detail

Detailed information of Bpl_scaf_25745-1.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_25745-1.11	SUGAR HYDROLASE-RELATED	Bpl_scaf_25745	133746	150244	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_25745-1.11

ATGGTTATCGTTTCCGGTTTTATATTTATTACCATCGTTCAATTTGTTAATAGCGACTTTCCGTTTCGAAATACCTCTCTCTCATGGGAAGAAAGAGTGAATGACCTCATAAGCCGGTTGACTTTAGAGGAAATAATGGTCCAGATGAGTAGGGGAGGATCGGGTCCACACGGCGGCCCCGCCCCTGCCATTTCAAGGCTTGGTATAGACCCATGGAGTTGGAACACCGAGTGTCTTAGAGGAGATGGCAATTCAGGAAATGCTACGGCATTCCCACAGGCAATAGGACTGGCGGCTTCATGGAGTACTGACGTCATACACAATGTTGCTGAAGCTACTAGTATTGAAGTCAGGGCAAAGTACAACTACTTCAAAGAAAATCAACAATATGGCGACCATAAAGGGATAAGTTGTTTTAGTCCAGTTATTAACATTATGCGGCATCCACTATGGGGACGTAATCAGGAGACTTATGGAGAAGATCCATTCCTAAGTGGAAGTTTAGCATACAGTTTTGTACAGGGCCTGCAGGGAGGTAATCCTAGATATGTTCGAACCAATGCTGGGTGTAAACATTTAGATGTTCATGGAGGACCAGAAAACATTCCTGTCTCCAGATTTTCGTTTGATGCTAAGGTATCAGAAAGAGACTGGAGAGTGACCTTTCTACCTGCATTCAAGAAATGTGTTGAAGCCGGTACATACAGTTTTATGTGCAGTTTTAACAGGATAAACGGAGTTCCAGCGTGTGGAAACAAGAAACTATTAACAGATATATTACGTACAGAACTTGGATTTACAGGTTATGTTGTGAGTGATCAAGCTGCTATAGAGAACATCATAGAGTTTCATCATTATACTAATAATTCTATAGACACTGTAGCATTGTGTGTCAACGCTGGTTGTAACCTCGAGTTATCTACAAATTTGGACAAACCTATCTATTTCTCAATGTTGGATGCAATTAAAGCACATAAGTTAACCAACCAAACAGTCTTGGAAGCTGTGAAACCGTTATTTAATACAAGGATGCGATTAGGAGAATTCGACCCTCCTGAGATGAACCCTTATAGTTACCTAGACCTATCTCTTGTTCAGAGCGTTAACCACAGACAAATAGCCATGGATGCTGCCAAAAAATCATTTGTACTACTTAAAAATAAGAACGATTTCCTTCCTCTAAAGCAACGTCTGAAAAAAATTGCAGTCTTAGGTCCAATGGCTAACAATATTAATCAACAATTTGGAAATTACAACCCGGATATAATGCCTATGTATACTACGACACCATTAGACGGATTGAAGGGACTTTCTGAAACTACAAACTACGCCCCTGGTTGCCATGACAACAGATGTATGAAATATAATAGTACAGCTATAAAGACAGCAGTACAAGATGTAGAACTGGTTGTTGTGTGTCTTGGTACAGGCCAAGAATTAGAAAGCGAAGATAACGACAGACAGTCAATGGCACTTCCTGGAAACCAGTCTCAATTGATTAACGATGCTATTGCCTTCTCTGGATCCACCCCTGTTATACTTCTTCTGTTTAACGCTGGACCTCTAAACATAACAATGCTAGATGCCGATGACCGAGTGGTTGCCATCATGGAATGTTTTTTTCCTGCCCAGGCTACTGGTGAAGCAATTAGAATTGTATTGACTAACAGTGGTAATAACTCTAATCCAGGTGGTAGATTACCATTTACATGGCCAATGTATGATTACCAGATTCCTTCGATGACAAACTACTCCATGGAAGAGAGGACTTATAGGTATTTCACAGGGAAACCTCTTTATCCATTTGGTTATGGTTTATCGTATTCAAAGTTTTATTATTATGATGCCTGGGTTACGCCCACTATTAAAGCAGGAGACGAACAAGGTGTAAGGGTTGAAGTAGGAAACAAAAGTCCATATGCAGGTGATGAGGTGGTGCAGATTTACCTTAAGTGGACCAATATCACACAAAGGATGCCAAATATTCAACTAGTTTCCTTCCAACGAATTCACATTGAAGCAAATGGAGTAGCACATTTTCTGTTGTACATATCACCGGAAGACATGGCTGTGTGGGATGATACAGAGGGATTTGTGATATTACCCGGTAAAATACAGATTTTTATTGGTGGACAACAACCAGACCAATCAAAGAGCGTGCCCTCGAATATACTAAACAGAGAATTCAATATCATTGGTAAACATGTACTTTCCAAAAAGTAG

Transcript

Bpl_scaf_25745-1.11

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00933	Glyco_hydro_3	Glycosyl hydrolase family 3 N terminal domain	Domain	Interproscan
PF01915	Glyco_hydro_3_C	Glycosyl hydrolase family 3 C-terminal domain	Domain	Interproscan
PF14310	Fn3-like	Fibronectin type III-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001764	Domain	Glycoside hydrolase, family 3, N-terminal	Interproscan
IPR002772	Domain	Glycoside hydrolase family 3 C-terminal domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR026891	Domain	Fibronectin type III-like domain	Interproscan
IPR036881	Homologous_superfamily	Glycoside hydrolase family 3 C-terminal domain superfamily	Interproscan
IPR036962	Homologous_superfamily	Glycoside hydrolase, family 3, N-terminal domain superfamily	Interproscan
IPR044993	Family	Beta-D-xylosidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42721	SUGAR HYDROLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0009044	Molecular Function	xylan 1,4-beta-xylosidase activity	Interproscan
GO:0009505	Cellular Component	plant-type cell wall	Interproscan
GO:0031222	Biological Process	arabinan catabolic process	Interproscan
GO:0045493	Biological Process	xylan catabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05349	bglX; beta-glucosidase	EC:3.2.1.21	Starch and sucrose metabolism	ko00500	PMID: 28812709
			Cyanoamino acid metabolism	ko00460	PMID: 28812709
			Phenylpropanoid biosynthesis	ko00940	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_25745-1.11 global RNA-seq network