Gene detail

Detailed information of Bpl_scaf_25431-0.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_25431-0.11	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3	Bpl_scaf_25431	4104	16037	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_25431-0.11

ATGTCAGCTGAATACAGTCATCAAATATTGAAGGTTTGTGTGGCACAATTATGTCAGAATCTAGGATGGAACTCAACACAATCAACACCATTAGAACTTCTTACAGATGTCTTGGAGCGTTACATATTAGAAGTTGGCAAAGTAACACACAGATATGCAGAACAGTTTGGTAGAACAGAACCAACTGTAGACGACATTGGCTTAGCTTTCCGCCATTTAATTGTCAGTCCAAGTGAATTAGAAGAATATATTACAAATGCAGACCCTGTTCCATATGCCCACGATGTGGTGGCATTTCCTGTTCCAAAGAAGAATAATCTACAGTTCCCTAAACCTGGAAGTAGAGAGGTTGCAACTAGGGATGAATCTATACCAGAATATATGCCATTGATGCACCCAGAGTTAGAAGAAGAAGAACCATCATCAGCTTCTGCCCTGACCAGTTCTGACATGGGTCTGATGGGACTGTTGCAACAACCTATAACAAATACAACGCTGCTGAGTCCTACAGAGGGCACTGTAGATAAAAATTCACTTACACCACCAGATGGTCCTCCTTTTAAAAGGAGAAGATTAGACAGTGGTGCATTACCAGAAGAAGCAGGTCCTTCATTGTATGAAATGAAGAGTATCATTATATCAACATCTGGTGACCTGACCCCAACTCATGGAAAAGCTGGAAAACTGCCTGATCCTAGGACACCACCGCAAGGACATCCCAAAAAACTCAAAGATTCTCCAAAAGTATCTCCAAACAAATCTAAAAAGCTATTTGAAAAAGAAAAATCTGATTCGAATAAAGAACGAATACAAAGAGACTTGTTTTCAGAAACAATAACTATCACAACATCACATGATAAGTCAGACAAGGAAATTGTCAAGTCCAAATCTACAGTTATTACCCCTGCTGGATATGAACCAAGATCTAAATCACCAGGTCATGCCAAAAGTCCGAAGGGTCCAGGACGGCCTCCAGGTAGACCTCCAAAAAGTCCAGGTAGGCCTCCATTAAAAAGAAGTCCTGGTAGACCACCTATGCAGAGAAGTCCAGGAAGACCCCCATTATCCAGAAGTCCTGGAAGATCACCATTTCAAAGAAGCCCAGGAAGGCCTCCTTTACATAGGAGTCCTAGTAGGCCTCACTCTGGGAGAAGCCCTGGTAGACCTCCAAAAAGTCCTAGAGGAAGACCACGGGGATTCATTCCAGTTGTTGTAAGGCCAAATCCTACGGCAGACCTAGAAAAAATAGAAAGGAAAATACTTGAAACTTTGTCACCTCAACATCAACCATCTACAGAAGAAGTTAAAGAAACTGCTACTCCAGTTGCTGAACCCTTTGACTTATCAACTTCTACAAAAGAATCAGATGACTCTAAGCAAGAAGCTGTTGTAAAGACTGAAGATAATGATGAAGGTTCACAAGACAAACTGATGATTGTAGAACAAGCCCACAGACCTCGTGGTAGGCCTCCCATTAGTCCAGAGAAAAAGATGGCAAGACTGGCAAACATTGATTATATCATACAATCTGTTATTGAAAAATCAGCAGTAGATCAAGATAATGAAAAGAAACAAATTCAACCACTTAGTGATTCTGTTGATGAAACAGGTATTAAAATTGAGATCGACCAAGACAGTAATTCAGTTGTTAATGAAGAAGAGTCATTTGATGCATATGTCACAAATGTGACCTTGGATGACCTCCAGGATAAGATTGAACCCGAAATTACAGTAAAAACTGAAGCAGTTGATGTTAATGATAGTTCAGCTTCTAACAAAGACAATGTAAATATTGTTGTACCTGCAGTTGAAAAAAAATCTCCTGTTCCCCTTAATGTACCTCTGCTGGTTTCACCACCAAAAAGGAAAGGTAGGCCACCAGGGTCTGGCAAAAAGAAATTAGCTTCCTTCAAAGAAAAGTCTAAACTTAAACAAAAAGTTTTATCAGAAACAATAAGTGAAGTTAACATTGTTGACAGCAAATCACCATTTACAAAATCTGAATCTGTTAATTCTGTGAATAAAGAAGCAGATCCATGGATGGCAGCCATGTCTGCTGCTGGGTTAGCCGTATCCATAAGACCTCCTGAACCAGAAGAGGACACTCAACCAGCTACTGTTGAGATGGATATTGCAGAAACGATAGAGGTGGAAAATCAAACTGTGGAAGTGAAAAGTGAACCAGTTGAAGTGAAAAGTGAACCAGCAGAAATGTTCAAGGAGGAAAAGAAAACGAAGGAAAAGGACAAATCTGAAAAACCAAAGGTGAGCATA

Transcript

Bpl_scaf_25431-0.11

TAAACCGGAAGTATATCATTACAACAAATTCTCTCAATATTTTGGAGGAAATCGATACTGCTAGATAATTTTGGAAGATTATCACAGAAAACATGCAATGCAATTCTTCAAAGGTAGCGCATTAAGTGCATGATACCAACAGAGCATCTGGACCAGAAAATATACATGGCAGACTACTTAAATTGTAGACTGAAGCATGTCAGCTGAATACAGTCATCAAATATTGAAGGTTTGTGTGGCACAATTATGTCAGAATCTAGGATGGAACTCAACACAATCAACACCATTAGAACTTCTTACAGATGTCTTGGAGCGTTACATATTAGAAGTTGGCAAAGTAACACACAGATATGCAGAACAGTTTGGTAGAACAGAACCAACTGTAGACGACATTGGCTTAGCTTTCCGCCATTTAATTGTCAGTCCAAGTGAATTAGAAGAATATATTACAAATGCAGACCCTGTTCCATATGCCCACGATGTGGTGGCATTTCCTGTTCCAAAGAAGAATAATCTACAGTTCCCTAAACCTGGAAGTAGAGAGGTTGCAACTAGGGATGAATCTATACCAGAATATATGCCATTGATGCACCCAGAGTTAGAAGAAGAAGAACCATCATCAGCTTCTGCCCTGACCAGTTCTGACATGGGTCTGATGGGACTGTTGCAACAACCTATAACAAATACAACGCTGCTGAGTCCTACAGAGGGCACTGTAGATAAAAATTCACTTACACCACCAGATGGTCCTCCTTTTAAAAGGAGAAGATTAGACAGTGGTGCATTACCAGAAGAAGCAGGTCCTTCATTGTATGAAATGAAGAGTATCATTATATCAACATCTGGTGACCTGACCCCAACTCATGGAAAAGCTGGAAAACTGCCTGATCCTAGGACACCACCGCAAGGACATCCCAAAAAACTCAAAGATTCTCCAAAAGTATCTCCAAACAAATCTAAAAAGCTATTTGAAAAAGAAAAATCTGATTCGAATAAAGAACGAATACAAAGAGACTTGTTTTCAGAAACAATAACTATCACAACATCACATGATAAGTCAGACAAGGAAATTGTCAAGTCCAAATCTACAGTTATTACCCCTGCTGGATATGAACCAAGATCTAAATCACCAGGTCATGCCAAAAGTCCGAAGGGTCCAGGACGGCCTCCAGGTAGACCTCCAAAAAGTCCAGGTAGGCCTCCATTAAAAAGAAGTCCTGGTAGACCACCTATGCAGAGAAGTCCAGGAAGACCCCCATTATCCAGAAGTCCTGGAAGATCACCATTTCAAAGAAGCCCAGGAAGGCCTCCTTTACATAGGAGTCCTAGTAGGCCTCACTCTGGGAGAAGCCCTGGTAGACCTCCAAAAAGTCCTAGAGGAAGACCACGGGGATTCATTCCAGTTGTTGTAAGGCCAAATCCTACGGCAGACCTAGAAAAAATAGAAAGGAAAATACTTGAAACTTTGTCACCTCAACATCAACCATCTACAGAAGAAGTTAAAGAAACTGCTACTCCAGTTGCTGAACCCTTTGACTTATCAACTTCTACAAAAGAATCAGATGACTCTAAGCAAGAAGCTGTTGTAAAGACTGAAGATAATGATGAAGGTTCACAAGACAAACTGATGATTGTAGAACAAGCCCACAGACCTCGTGGTAGGCCTCCCATTAGTCCAGAGAAAAAGATGGCAAGACTGGCAAACATTGATTATATCATACAATCTGTTATTGAAAAATCAGCAGTAGATCAAGATAATGAAAAGAAACAAATTCAACCACTTAGTGATTCTGTTGATGAAACAGGTATTAAAATTGAGATCGACCAAGACAGTAATTCAGTTGTTAATGAAGAAGAGTCATTTGATGCATATGTCACAAATGTGACCTTGGATGACCTCCAGGATAAGATTGAACCCGAAATTACAGTAAAAACTGAAGCAGTTGATGTTAATGATAGTTCAGCTTCTAACAAAGACAATGTAAATATTGTTGTACCTGCAGTTGAAAAAAAATCTCCTGTTCCCCTTAATGTACCTCTGCTGGTTTCACCACCAAAAAGGAAAGGTAGGCCACCAGGGTCTGGCAAAAAGAAATTAGCTTCCTTCAAAGAAAAGTCTAAACTTAAACAAAAAGTTTTATCAGAAACAATAAGTGAAGTTAACATTGTTGACAGCAAATCACCATTTACAAAATCTGAATCTGTTAATTCTGTGAATAAAGAAGCAGATCCATGGATGGCAGCCATGTCTGCTGCTGGGTTAGCCGTATCCATAAGACCTCCTGAACCAGAAGAGGACACTCAACCAGCTACTGTTGAGATGGATATTGCAGAAACGATAGAGGTGGAAAATCAAACTGTGGAAGTGAAAAGTGAACCAGTTGAAGTGAAAAGTGAACCAGCAGAAATGTTCAAGGAGGAAAAGAAAACGAAGGAAAAGGACAAATCTGAAAAACCAAAGGTGAGCATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07524	Bromo_TP	Bromodomain associated	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006565	Domain	Bromodomain associated domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR017956	Conserved_site	AT hook, DNA-binding motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46452	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002039	Molecular Function	p53 binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14650	TAF3; transcription initiation factor TFIID subunit 3	-	Basal transcription factors	ko03022	PMID: 28812709
K14650	TAF3; transcription initiation factor TFIID subunit 3	-	Herpes simplex infection	ko05168	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_25431-0.11 global RNA-seq network