Gene detail

Detailed information of Bpl_scaf_24996-18.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_24996-18.17	ADP RIBOSYLATION FACTOR-RELATED	Bpl_scaf_24996	1779781	1786907	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_24996-18.17

ATGAAACTATGGTTTAACGTGGAATCATTTCAATACAAAGACTTACATCTGAATGCATGGGATCTTGGATTTGGCGGGAAAATGCGACCACTGTGCCAACATTACTACAAAGGAAGTAATGCAGTCATTATCTTGATCGATAGTGGTGACAGAGAAAGGTTAGAAGAGGTCACTTATGACGTCATCAAACCAGCGCTGAAATCAGAAGAATTGAAAGACGCTGTGTTTATGTTTCTTTCAAATAAGTCGGATATAAAGGATGGCATGAGTATTCAAGAAATTACAGATGCTTTGGCATTACAGAATCTAAAACGGAAGTGGAATATATTCTCTGTGAGTGCATTAAATGGCGATGGAATAACAGAAGCATTCGATTGGCTGGCTTTACAACTAGGATCTTGTCAAGTGCAACAAACAAGTGAAACGAGCATGAAACAAACGACAGACATTAATAAAAAGGAAACTGAAAGTAACAGTGCAGTAATGTCACATAACCCTGTCACATGTGATCAGACATACAGTGCGTTAGCTTGTTTCTTCATACGGCCAAATCAAGCCGTCGGTATTGAGGAGGACGATGATGACGATGACAATGGACCGACGGTGTTGTGACATCGTCGGTTTAAACCAAAATAATCATAGATCTCATTTCAAGACAACCCTCCAAAATGTGATGTGCTATATATATATCACTATGTGATAATACAGATATCTAGAAGGTCGAGACCGACAAATGAAATCGCTCTCTTTCATTTCCTCACTGTGTGAAAGTTTTGTTTGTTTGTTAAGATGTACATGTATGTTTTACAGATTTTTAGAAGGTGGAGATCAACCAGTGAATTCATTCTTTCTTCTATGTTTGAAAGTCTTTGGTGTGATATATTGGTACTTGTTTATTCTGAAAGATTTTTGTGTCTTTAAAAAACAATGGAAACAAATGGTATGGCATTATTGTGGATAAATCAAACTACATGTAGAGTACACTTTCGGTAACCCACAGCTGATCAGGCTTGGATTACTCTCCATCCATCACTGTGGGTTATCTACTATGACTAGAGTAGAACAAAGTAACAATATTTTTTATCAACAATATATGGATAATTTAAATGTAACAGGGCTTTTCGTTCACAATGTGAGTAGTAGTAACTTATATTTTTCTGCCAGTAACTAAGTGGGAAACACTCAGAAGTATATGAAATTCAAGGAGGCTGAATTAGCTATAAAGGAAACTGTTATTCCAATTAAGACAGAAGCTCAGAAAAAAAAATAGCATATAAATAACCAGGCATTATTTGAATGGATGATAAATACATGTAGTCTGAAATCAAATTTGTGTGCAAGCATAATTTTTTCTAATATGTCAATAAATTTTCAATGGATGTAGAAACCTGAAATTTCATTGTCAGTTTTGAATATTATTTTACATTCAATACTCTCTGAAAACATTTAATAAATGCAACAACAAAAAGTTTTATATAAGTAATGAATGTATCACTTATTGGTGGTTCCATTCAAAATTTCATATGAAGAATTATCTATGTAAATTATGTTTTCCACTTTCCTAGAATTTGTAGAAGTTTTTCATTGTAGAAATTTCTGTAACATGTATCATGTTGTCAATATTTGGCAATAATGTTTTTTATATTATTATTTTTTTACCAAATTATGTTAAGATATTCTTCCCTAAAACTATTATATCTTTTTATATCTTTATTAATATGGACACATGGGTGGTCCATATGCATTTTCAAAATACACAAATGTACATGTATATAAACCCTTGTTAGACGTAGTTATTCCAACTATTTTATATATTTTTAATTTCCAATATCCTGCTCAAATAAATCATACCATTTATAAAATAACATACACACCATAGGATCAATAATATTTTTACTATAAGCTCATATTTCATTTTATGTGTATGTAAAGGTTGGGACTCTCCGTTTGAAACGTATTTGTCGTGTGTTTATGTATCCCCCCCCCCCCCCGGTGCACTTTTTTGGTGAAACACTAACTGGTATTCTACTTCTATTAATTTTCTTCGGACATTCAGGGTTCATCCATCGCTAAAACTACGGTCAGTAACTAACAAATGATCACACTCCAATTACTCTCCATTTAATAGAGAGTGGAGAGGAATCGAAGCATGGTCAGCCGTGGGTTACCGATGATGTTGCTAAGCATGACCTCATGTTATAGCCAAAATATAGCTGAAGTATTGGCATACATTGCACTTCACATCAATTTCAGATAGAATTAGGCAAATTTGCACCAGGCAATATATCATAAACAAGAATTTTCCGTTTTCTGTTTTTGTTTTGTTGTTGTTTGTTTTTGTTTTTGTTTTTGTTTTTATTGTTTTGTATAATTGTATGATGTGAGTGTGGGGCCATAGTGTTTCATTAATTGTAACTTCAAGGGACAAAAAATGATCATTTTATTTGTTCTACAGTCTTGATTTTAATTTTGTAAAGTGGTTGTACTGATTTTCACCATTAACAGTCAATGTAACCACAGATCATAACTACAATAATTCCATTGGACGGTAGCGCCAAGTTATGAAGCTTATACATCGATAAACATGTGTATTCATACGTGCTGATTATATATTTTTCACTATTTTTGTAAATTGAATATGCAAAGATATATGTTGTTTTTTAAGAATAGAATGATAAGAATTACACATTTTTTTTTTAGATTTGACTCTCAAACTTACAATAAATCTTTTGAGTAATTGAGTCCCCAGAGTTTAGGCATCCATCAATTCATACATATCATTTTCAAGCTATAACTGTTTAATTGAGAGGTAAAAGACATTTATAAATATTAAGTAGTTAAACAGTTTCTTGTTTGTATTTGGCATATCATGTGGTAGTGAAGTCTGATAGCAGGCGGATCCAGGGGGGGGGGCGCACCCGGCGCGCGCCCCCCCTAAAATTGGAAAAATATGATTTTTTTGCGTAAAACCGTGATTTTTCACACGAAATACCAAAAAAAATTCGCGCCTCGCTCCGCTCGGCAAGATTATTTTAAGTACGCCCGCTAACTTGAAATCCTGGGTCCGCCCCTGGGTAGTGACATCTGGAAGATCGGTATAATTTATACCCGGTACTTCGACTTCCTCTGCCAATTGAAATGGCCACAATGATATAACTGAAATATTTTTTCGAAAGTTGTAAATCTCTAAATCGGCAAACCTCTGGTGAATCCACTGTTCTCTTTTGATGGAGGACTGTGTAAGGGAATCAGTCGAGATGTGGCGAGTCGCCAATCTCTTACACATAGAGCTATCGAATCTTATTAATTTAAGGATCGATAAATCTGGGTAAGAGATTGGTTAGTTACTTTAAACATTCACAATTCAACCAAACAATTTGAAAATTAGTTTATATTTTTGATATTTTGAACGTTCATCAAAGTCCAAGGTAAAAAACATCAGTGGCATTCCCATAATTCAGCAAGATGGATTTATTTGTGTATTGTTATCTCGCCTGGGCAAACACTTAGTGAACTTTTATAACCAAAATAGAATCTACAAGTTGATAGGAGATTATAATTTGTGCAAACGAAATTTATTATCAATGAGGAGGATAGGTAATAAAATAATTTTTTTATTACCAAGTGAGAGGTATAGACTGGTGTGAGCCTCTTGATCACTTCTTTGTATCTCAAATTATTATTAAAGCCCAATGTCATTGCTATAACTGCAGACATGTGGCAGTGGGCTTTAATGTCGTATTATTAAACGTTATCCTGAATTCGACATCAAATCAAACAGCATATCTGCTCATGACATTTGAGTTGCATATGTATACTGATTTAACTCCGCCATAATTTTGTGTCTGTCTCAAGCCAGGAAGATTTCGAACGTCACATGTGGTGGTCTTTTTTGTTGTTGTTCAATGAGTTAATATGGGAGGTGATTATTCGTGGAATTGTTGACCACCACTGTTGAAACTTTCTTTTCATAATCTTATGCGACCTTATGTAAGGATGTAACTGATTTATGGTTTGAAAGGTACATCAAATTGTCCGTCCATTTCAAACGATTTGAATTACACTGTTACATATTAACTACGACCAGTGTCTAGTGCCATAAAAGTTCGTGTACACTTTATTTTCTTGTGGAATGTTTATTATCTAGTCATCTTGTTATTTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025	Arf	ADP-ribosylation factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006689	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR024156	Family	Small GTPase superfamily, ARF type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07937	ARF1; ADP-ribosylation factor 1	-	Phospholipase D signaling pathway	ko04072	PMID: 28812709
			Endocytosis	ko04144	PMID: 28812709
			Vibrio cholerae infection	ko05110	PMID: 28812709
			Legionellosis	ko05134	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_24996-18.17 global RNA-seq network