Gene detail

Detailed information of Bpl_scaf_24975-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_24975-1.9	WD40 REPEAT PROTEIN	Bpl_scaf_24975	205239	244987	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_24975-1.9

ATGGAAGGTGGTCTTATAACAATACCCATTCATAGGGGATACCAACAGAGAAAATACTATGCCCCTCCACCTCAACAGGCTCCACCCCAGCTACAGAAGCCCATCAACTATCAACCTCAACAAAATGTTGCCCAGCCACAGCAGAATCCTGCCGATCCAAACAAAGATCCGTCCCAGGCTGGGCAGGTCGTCATGTTTGATGGGAAACGTATGAGAAAGGCTGTACACAGGAAAACAGTAGATTATAATTCTGCAGTGATTAAATACTTAGAGAATCGTTGTTGGCAGAGAGATGACCGAGATGCAAGGGCTATAATGCCAGATTCTTTGTACCAAATTGAACTGACGCCTCCAATGAGTATGATTACCAATCCTACAAACTGTGTGACTACAAAGTTTATAAGAACATCTACAAATAAGTTCAGATGTCCAATCTTCTGTTTAGCTTGGACACCAGAAGGAAGAAGACTTGTGACTGGGGCCTCCAGTGGGGAGTTCACACTCTGGAATGGTTTAACATTTAATTTTGAAACTATTTTACAGGCTCATGATACTTCCGTACGAGCAATGGTGTGGAGTAACAATGATGCTTGGATGGTTACAGGGGACCATTCAGGTTTTATCAAGTACTGGCAGACCAATATGAATAATGTCAAGATGTTTCAGGGACACAAGGAACCAGTTCGTGGGATCAGTTTTGCTCCTTCTGACAATAAATTTACAACATGTTCTGATGATGGTACAGTGAGAATATGGGATTTCCAAAAATGTCACGAAGAGAAGACTTTAAGAGGGCATGGTGCAGATGTAAAATGTGTGAGCTGGCATCCACAGAAATCGTTGATAGCATCTGGAAGTAAAGATAACCAACAACCATTGAAACTGTGGGATCCTAAGTCTGGGCAGTGTCTAGCAACTATACATGCACATAAAATGACAGTAATGCAGCTACAGTGGAACAAGAATGGCAACTGGTTGTTAACAGCTTCTCGTGATCATCTCATTAAATTATTTGATATTCGTAACATGAAGGAAGAAGTGCAAACATTTAAAGGCCACAAAAAAGAGGCTACAGCCATAGACTGGCATCCTATACATGAAGGATTATTTGTGTCGGGAGGATCAGATGGTGCTGTAATGTTTTGGCATGTTGGAACTGACCGAGAACTTGGAGGTATGGAGTATGCACATGAAGGCATGGTTTGGAGTCTAGCATGGCATCCTCTGGGTCATATCTTAGCTTCAGGATCTAATGATCATACAACAAAATTCTGGACACGTAATCGACCAGGAGACAGAATGCGTGACCGTTATAATCTTAATCAACTGAATGGATCTGAACATGAATTACCAGAGTTTGATTTAGAAAACACAGCTCCCATAGTGACAGCAATGTCCTCCATACCAGGAGTAAATGAAGGCACAATACAAGAGGCAATTAACAATGGAGACATGCAAGATGAAGATGTATCTATCCCAGGTTTAGACTGGGAAACGGATTCTAAATTTATCAAGGATCATCACAGAGAACAAAATCAACGACGTAAAATTCCCTACTCCCGTCCAATAGATAGAGAATTTGTACATGCATGGAGAAGTAACAAACAACCGCCAGCTATTTCTGGTGAAAAGATTGAAGAAAAAGACAAAAAGCCAAAAGTTCCATTACCAAGTCTGTTAGATTTACCCTCCATGAAACCAGCAGGTGATTTTGACCTTGAAACGTTAAAAGACGAGGAAGGTGATAAACAGGGAAGACAACTCCGACAAGGAAGAAATAAAGATTACCAGAGAGAAAAGAGGGGTATGAGAGACAGAGATAGGGATAGGGATCGGGACAAAGATCGGGAAAGAGGCAATGATAGGGACCGTGACAGAGGCAGAGACCGAGGACCTCGACATACATCTGAAAGGAATAGAAATGAGTCACATGTTGATGACGATTTTGAGGAAAGAATGGCAGAGGAAAGCTTAATAGAAATGCAGGAAAGAATGGATAACTCAAGGGACAGTGGGGATGATGATGACCATATGATGGATCGTCAAGATGGAATGATGGGAAATCAATTTGGGGCTATGAGAGGAAAGCAAGGCATGATGGGGAATCCAAAAGGAATGATGGGAAATCAGAAAGGAATGATGGGACAACAAGGCATGATGTGTAATCAGCAAGGCATGATGGGCAATCAACATGGAATGATAGGTAATCAACAAGGCAGAATGGGAAGTCAACATGGAATGATGGGTAATCAACAAGGCATGATGGGAAATCAAGGGTTGATGGATAATCCAGAACAAGGAATGATGGGAAACCCACAAGGAATGATGAGATCAAATCAACAGGTCATGATGGGAAATCAACAAAACATGATGGCACAAAATCGACAAGGACTGATGGGGAATCAACCCGGAATGAGAGGCCCAAATCCTGGTTTGATGGGTCAACAAGGAATGATGGGAAACCAGCTAGGCATGATGGGACAAAATCGACCAGGCTTTATGGGAAATCGACCAGTAATGGGTGGTCCGATAGTACCACAAGGAAACAGAATGGGAGTTGCTGGACAGCAAGGTGGTCAACGAATGCCTTTATTAGGTCAGGGTCCGGGAATTGGAAATCAAGGAGGGCCGGGTGCAATTAGGCCTTTCAATCAGGATGTGGATTTTAGAGGACAAAATCAAAATCAGGGACCAAATCAAAGAGGAGGTGGACATGTAGACAAAGACAAAGACATAAGAAATCAGGACTCAGATTTTCGTAATAAGCAGGACTCAGACTTTCGTAATAAGCAGGATTCAGATTTTCGGGATAAAGACAATAGACAAAGAAAGGGAGATACCAATTTTGGAAATGACCGTGGAAATCAACGATTCGATAACCAAGTAGGTCATGGCCAAAATCAACAAGGTCAAGGCCAAAATAGACAGGAGGAGATGATGGACTTTGACGATCGTGATTCTTTCAATCGACAAGGAGACGGAAGAAATCGAGATTGGAATGATGGGGGTGGGAAAGGTGGAGGAAGAGGGGGTGGGAGAGGTGGAGGAAGAGGGGGAAGGGGAGGTGGGGGTTGGAGAGGGGGACGGTGA

Transcript

Bpl_scaf_24975-1.9

GCCATTTTATTCAGAAACGTGCGACAAGAAAAGAATGACATCTAGGATGTAGAAACAAAGAATATCGTTTTGTTTTGAAAATAAATGATTTAAACGATTAATAAATGAAATAAATCACAACCCAGTATACACAATGGAACATCTGTATAGTTATAACGTGGTAATGCTTTAGATAAAGTGACAGGATGGAAGGTGGTCTTATAACAATACCCATTCATAGGGGATACCAACAGAGAAAATACTATGCCCCTCCACCTCAACAGGCTCCACCCCAGCTACAGAAGCCCATCAACTATCAACCTCAACAAAATGTTGCCCAGCCACAGCAGAATCCTGCCGATCCAAACAAAGATCCGTCCCAGGCTGGGCAGGTCGTCATGTTTGATGGGAAACGTATGAGAAAGGCTGTACACAGGAAAACAGTAGATTATAATTCTGCAGTGATTAAATACTTAGAGAATCGTTGTTGGCAGAGAGATGACCGAGATGCAAGGGCTATAATGCCAGATTCTTTGTACCAAATTGAACTGACGCCTCCAATGAGTATGATTACCAATCCTACAAACTGTGTGACTACAAAGTTTATAAGAACATCTACAAATAAGTTCAGATGTCCAATCTTCTGTTTAGCTTGGACACCAGAAGGAAGAAGACTTGTGACTGGGGCCTCCAGTGGGGAGTTCACACTCTGGAATGGTTTAACATTTAATTTTGAAACTATTTTACAGGCTCATGATACTTCCGTACGAGCAATGGTGTGGAGTAACAATGATGCTTGGATGGTTACAGGGGACCATTCAGGTTTTATCAAGTACTGGCAGACCAATATGAATAATGTCAAGATGTTTCAGGGACACAAGGAACCAGTTCGTGGGATCAGTTTTGCTCCTTCTGACAATAAATTTACAACATGTTCTGATGATGGTACAGTGAGAATATGGGATTTCCAAAAATGTCACGAAGAGAAGACTTTAAGAGGGCATGGTGCAGATGTAAAATGTGTGAGCTGGCATCCACAGAAATCGTTGATAGCATCTGGAAGTAAAGATAACCAACAACCATTGAAACTGTGGGATCCTAAGTCTGGGCAGTGTCTAGCAACTATACATGCACATAAAATGACAGTAATGCAGCTACAGTGGAACAAGAATGGCAACTGGTTGTTAACAGCTTCTCGTGATCATCTCATTAAATTATTTGATATTCGTAACATGAAGGAAGAAGTGCAAACATTTAAAGGCCACAAAAAAGAGGCTACAGCCATAGACTGGCATCCTATACATGAAGGATTATTTGTGTCGGGAGGATCAGATGGTGCTGTAATGTTTTGGCATGTTGGAACTGACCGAGAACTTGGAGGTATGGAGTATGCACATGAAGGCATGGTTTGGAGTCTAGCATGGCATCCTCTGGGTCATATCTTAGCTTCAGGATCTAATGATCATACAACAAAATTCTGGACACGTAATCGACCAGGAGACAGAATGCGTGACCGTTATAATCTTAATCAACTGAATGGATCTGAACATGAATTACCAGAGTTTGATTTAGAAAACACAGCTCCCATAGTGACAGCAATGTCCTCCATACCAGGAGTAAATGAAGGCACAATACAAGAGGCAATTAACAATGGAGACATGCAAGATGAAGATGTATCTATCCCAGGTTTAGACTGGGAAACGGATTCTAAATTTATCAAGGATCATCACAGAGAACAAAATCAACGACGTAAAATTCCCTACTCCCGTCCAATAGATAGAGAATTTGTACATGCATGGAGAAGTAACAAACAACCGCCAGCTATTTCTGGTGAAAAGATTGAAGAAAAAGACAAAAAGCCAAAAGTTCCATTACCAAGTCTGTTAGATTTACCCTCCATGAAACCAGCAGGTGATTTTGACCTTGAAACGTTAAAAGACGAGGAAGGTGATAAACAGGGAAGACAACTCCGACAAGGAAGAAATAAAGATTACCAGAGAGAAAAGAGGGGTATGAGAGACAGAGATAGGGATAGGGATCGGGACAAAGATCGGGAAAGAGGCAATGATAGGGACCGTGACAGAGGCAGAGACCGAGGACCTCGACATACATCTGAAAGGAATAGAAATGAGTCACATGTTGATGACGATTTTGAGGAAAGAATGGCAGAGGAAAGCTTAATAGAAATGCAGGAAAGAATGGATAACTCAAGGGACAGTGGGGATGATGATGACCATATGATGGATCGTCAAGATGGAATGATGGGAAATCAATTTGGGGCTATGAGAGGAAAGCAAGGCATGATGGGGAATCCAAAAGGAATGATGGGAAATCAGAAAGGAATGATGGGACAACAAGGCATGATGTGTAATCAGCAAGGCATGATGGGCAATCAACATGGAATGATAGGTAATCAACAAGGCAGAATGGGAAGTCAACATGGAATGATGGGTAATCAACAAGGCATGATGGGAAATCAAGGGTTGATGGATAATCCAGAACAAGGAATGATGGGAAACCCACAAGGAATGATGAGATCAAATCAACAGGTCATGATGGGAAATCAACAAAACATGATGGCACAAAATCGACAAGGACTGATGGGGAATCAACCCGGAATGAGAGGCCCAAATCCTGGTTTGATGGGTCAACAAGGAATGATGGGAAACCAGCTAGGCATGATGGGACAAAATCGACCAGGCTTTATGGGAAATCGACCAGTAATGGGTGGTCCGATAGTACCACAAGGAAACAGAATGGGAGTTGCTGGACAGCAAGGTGGTCAACGAATGCCTTTATTAGGTCAGGGTCCGGGAATTGGAAATCAAGGAGGGCCGGGTGCAATTAGGCCTTTCAATCAGGATGTGGATTTTAGAGGACAAAATCAAAATCAGGGACCAAATCAAAGAGGAGGTGGACATGTAGACAAAGACAAAGACATAAGAAATCAGGACTCAGATTTTCGTAATAAGCAGGACTCAGACTTTCGTAATAAGCAGGATTCAGATTTTCGGGATAAAGACAATAGACAAAGAAAGGGAGATACCAATTTTGGAAATGACCGTGGAAATCAACGATTCGATAACCAAGTAGGTCATGGCCAAAATCAACAAGGTCAAGGCCAAAATAGACAGGAGGAGATGATGGACTTTGACGATCGTGATTCTTTCAATCGACAAGGAGACGGAAGAAATCGAGATTGGAATGATGGGGGTGGGAAAGGTGGAGGAAGAGGGGGTGGGAGAGGTGGAGGAAGAGGGGGAAGGGGAGGTGGGGGTTGGAGAGGGGGACGGTGATCGTTTTCGTTGTCACAGGCATTTAAATCAATTGAGATATGAAACGATAGGAAAAAATAATTATCACTTATTATTTATTTTGCTGAAGAATGAACACTTTATGGTACTGGAAGTTAGATTTATCTCTGTTGTTTACCGGCATTAATATATGAACACTTTATAGTGCTGGAAATTAGATACATCTCTTGTTTAGCAACATCAAAATATGAACACTTTATAGTGCTGGAAATGAGATTTATCTCTCTGTTGCTTAGCAGCATGAGAATATGAACACTTTATAGTGCTGAAATATGACGGCAGTAATACGAACATATGTCCTTTATTGGTGCATAAACAATTTTAAGTGCATTCTGAAAAGACAGTGTTTACACTTAAATGGTCTGAGTTGTAATGCAGGACAAAATTATGTAACAAGTCCAATGTTGAAGAAAGAATACTGCATACAAAATAGCTTATGTTAATTAAACATGTTACAGTCTTTGCACGAACCCACTTCCCGAAGCCTGGGACAAGTAAAACTGGATTCGGACAAGTGAAAATTATGAAAGAGTTGGTTTCAATGAATAGAAAATTTTCCTAACATTGGCTTTCGGGCAAGTAGGTGAAAAAAATTGAGGCAAAGACTGATGTTATGCTCAAACATAGATGACAGTAGATTTATATAGTTTGATCCTGTGGTACAGCGGGTTCTATGGTTACATGTATTCAAATGCTATTTCAATCTATTTATGACGCCATACTTTTGATTTAACTACCACGGTACCATAGGACCTGCAATACACATTTTGTATACATCAACAATGTATTTTGATTGGCTCAGGATTTATTTTATAGATAAGGAAGATTTATCACCGTTGTCATTGACAAAACAATTGATCTCTTAAAATATACAGTCAAGCCTGTATTAAGAGGTCACCTTTGGGAGAAAGAAAAAGTGGCCTTATAAGACAGGTGGCCTCTTTAAAGAGGTTCAATTTATATGAAATTTTCTATGACAAGAAAAATGTGACCTTTTAATACAGGTGACTGCTTAAGACAGGTGGCCGCATGGGCAGGTTTGACTGTAAATACATTTGGTAATTCTGACGAATACCAATATGATCTTGAAGGCCGTGCATTTAAGTGTTGGTCATCACATGGTGTCTGCCGTTATCAAATTTTCAAGACATTTTAACCTTCTAGAGAACTATTCATAAATAGTATCAGAGTTCACAAAATTCCTCAGTCTTGTCAGACATGACCAGCAACATTTGGGCAAATTTTGCTAAGGACTGACACAAGGTTGGTATTTTGCAATAGAAATTGAATGAGGCCTAACATTTTTTCACAAGGACCACCAAACTCATATGTAACTTTGCCCTGATAGTATGTACAATATTTGTTCATACCACAATATAGCTGAAATACTCCTTAAGTTGGTGTTAAACACCAGTCAATCAATCATAAATTATATATATGGTATCAAACTTGGCAGATATAGTCATAGAGGCTATTAGATTCAGACTTGTACAAATGAAGTTGATCTGACATGGGAAGGAGTCAATCAGTAAAGGGGTGGGGGTTAAAAAAAAAGAAGGAAAATTCATTATTTTCCAAAAAAATCTATTTTTCATGAACAGTAGGTGGTGGGTGGCAAAAAGTAGGAAAATTCAATATGTACTGAAAATCTATTTCTCAAGAACAAGAAATTTAAATGGTGTAATATTTAATTCAAAGCATCATTATGATATGTATACTATAGATTCATATTTATGCCAGCAAAGTTCCTAGGATCTATATGTAGCCTAGAATCCTGGGTGTCCATAATTTGATAGAATGCAGTGGAGAAAAAAGTTGAAATCTTCATTTTTGTCATAAGAAACAGCAATTAAAATGAAAATGCTCTGTGGTTTTCTCTGTGTACTCGGTTTCCTCCACCAATAAAACTGACCGCCATGATATAGCTCAAATATTATTGAAAGTGGCGTTAAACACGAAAACCCAAATGAAAATGCATTTTGCATGAAATATGATTGTTATGGGGAGATTCAACCTGTAATAAATCAAATACTGTGGTTCAATGGATCCACGCCCTGTTGGTCTATAGTTTAGCATATCCTGCAATGGAGGACAATTTTAAATATCATGAGATGGCTTGATGCCTGAATTTTATAAGAATAAAACTTGGAAATAAACGAACTTGGATCTATATGTAATATATGTTAAACACATGCTGCAAAGGGGATTTTTTTTATTTGGGGAGGGGGGGTGTTGGAGAGGAGAATTGCCAATGAATTGGGACAATATGTGATGCCGTAGTGTTTGACATGAAGGATGTTGCTATAAAGATCCCAATTTGTACACTTTAATATCCCTATATATCTGGAGTCCCAAGTCCTATAGGCCGAAGAAGAGACAATAATTTTTTTTTTAATATTTACTTAGTCGGCAATACAGGTTAAAAAAGCTTGTATTTATTGATGTTATAAATGAATTTATTTTTAATTTATTGACTGTGGAAGGTTGGTTAATTTATTTACCATAAAAGATATAATATATTCATTTTTAAACTGCCATGTACATGGGATATAACATCAATGTTAGTCTTTCCATTCCAAGATTGTATTCAACAACCTCAACTGCCTTCATCCAAAATGGCCACCATGACTAAAAATAGAAACTTTTCAGATGGCTGTGAAATTTGTATCTCAGTCTCTCCATTCTTCCATGATGATGTTGTGATGAGATAGAATTTCTGCAATAGCAGTTGTTCAGACTGGAGCAAATATTACATTATATCAATTCCAACAGAAAAAAGAATATTACAATATTTATTCCTGATGGAATAAAAGGGAAAGAGTATTTGATCATAGACAAAGAAATATTATAGTTTTTTTATACAACTATCCAAAGGAAGATACTGTTACTGAAAATAGAAAATACCTCATTTTGGGATAATTCCTACATTTTGCATGTTTCAAGATTTGGGTGAAAGTTAAAACTTGACCCAAGTTGTTTTTCATCTGTTTTGTTTTTCTGAGATATTCATGATTTAATCAATTTTATGTCAATGTGGTCATCTGAAAAGTTAAACTGACTAGTCATGATAATGTTACAGCTAAATTATTATAATTATCATTTGAACTCTCTCATCTGCCAATCGTAAATCAGGTGAGAGGAAATAAGACTGGTGTATCCTCTGATATTTTCATACTAGTCTGACATTGAAAACATTCAAGTCAAAAAATGGAGCTGATTTGAATTATTACCCTTTTGCATTATCATACATAGGCCTACATTGACAAGAACTTCATGACAGACATTTTGTACATTCTTCAGATATTCCATGAAGGATGGTTGATATAGTTTTTTATGTACACAGTGTAATTGTACATACATCATTTGTAAATAAAAAT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045245	Family	Pre-mRNA 3' end processing protein Pfs2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22836	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0031124	Biological Process	mRNA 3'-end processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15542	PFS2; polyadenylation factor subunit 2	-	mRNA surveillance pathway	ko03015	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_24975-1.9 global RNA-seq network