| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_24966-7.9 | NUCLEAR RNA EXPORT FACTOR | Bpl_scaf_24966 | 743565 | 776182 | - |
| CDS | |||||
| Bpl_scaf_24966-7.9 | |||||
| Transcript |
| Bpl_scaf_24966-7.9 |
| Protein |
| Bpl_scaf_24966-7.9 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03943 | TAP_C | TAP C-terminal domain | Domain | Interproscan |
| PF09162 | Tap-RNA_bind | Tap, RNA-binding | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001611 | Repeat | Leucine-rich repeat | Interproscan |
| IPR005637 | Domain | TAP C-terminal (TAP-C) domain | Interproscan |
| IPR009060 | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR015245 | Domain | Nuclear RNA export factor Tap, RNA-binding domain | Interproscan |
| IPR018222 | Domain | Nuclear transport factor 2, eukaryote | Interproscan |
| IPR030217 | Family | Nuclear RNA export factor | Interproscan |
| IPR032675 | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR032710 | Homologous_superfamily | NTF2-like domain superfamily | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10662 | NUCLEAR RNA EXPORT FACTOR | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006406 | Biological Process | mRNA export from nucleus | Interproscan |
| GO:0016973 | Biological Process | poly(A)+ mRNA export from nucleus | Interproscan |
| GO:0051028 | Biological Process | mRNA transport | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14284 | NXF, TAP, MEX67; nuclear RNA export factor | - | RNA transport | ko03013 | PMID: 28812709 |
| mRNA surveillance pathway | ko03015 | PMID: 28812709 | |||
| Ribosome biogenesis in eukaryotes | ko03008 | PMID: 28812709 | |||
| Influenza A | ko05164 | PMID: 28812709 | |||
| Herpes simplex infection | ko05168 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_24966-7.9 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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