| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_24922-1.21 | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | Bpl_scaf_24922 | 135619 | 172658 | + |
| CDS | |||||
| Bpl_scaf_24922-1.21 | |||||
| Transcript |
| Bpl_scaf_24922-1.21 |
| Protein |
| Bpl_scaf_24922-1.21 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | ULD|UBL|NEDD8 |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_Other |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_PIM |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00240 | ubiquitin | Ubiquitin family | Domain | Interproscan |
| PF01805 | Surp | Surp module | Family | Interproscan |
| PF12230 | PRP21_like_P | Pre-mRNA splicing factor PRP21 like protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000061 | Domain | SWAP/Surp | Interproscan |
| IPR000626 | Domain | Ubiquitin-like domain | Interproscan |
| IPR022030 | Domain | Splicing factor 3A subunit 1, conserved domain | Interproscan |
| IPR029071 | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR035563 | Domain | Splicing factor 3A subunit 1, ubiquitin domain | Interproscan |
| IPR035967 | Homologous_superfamily | SWAP/Surp superfamily | Interproscan |
| IPR045146 | Family | Splicing factor 3A subunit 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15316 | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000381 | Biological Process | regulation of alternative mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005686 | Cellular Component | U2 snRNP | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0045292 | Biological Process | mRNA cis splicing, via spliceosome | Interproscan |
| GO:0071004 | Cellular Component | U2-type prespliceosome | Interproscan |
| GO:0071013 | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12825 | SF3A1, SAP114; splicing factor 3A subunit 1 | - | Spliceosome | ko03040 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_24922-1.21 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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