| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_24692-2.21 | DNA-DIRECTED RNA POLYMERASES I, II, AND III | Bpl_scaf_24692 | 248511 | 262692 | + |
| CDS | |||||
| Bpl_scaf_24692-2.21 | |||||
| Transcript |
| Bpl_scaf_24692-2.21 |
| Protein |
| Bpl_scaf_24692-2.21 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03604 | DNA_RNApol_7kD | DNA directed RNA polymerase, 7 kDa subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006591 | Family | RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 | Interproscan |
| IPR029040 | Homologous_superfamily | RNA polymerase subunit RPABC4/transcription elongation factor Spt4 | Interproscan |
| IPR039747 | Family | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12056 | DNA-DIRECTED RNA POLYMERASES I, II, AND III | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001054 | Molecular Function | RNA polymerase I activity | Interproscan |
| GO:0001055 | Molecular Function | RNA polymerase II activity | Interproscan |
| GO:0001056 | Molecular Function | RNA polymerase III activity | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003899 | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0005665 | Cellular Component | RNA polymerase II, core complex | Interproscan |
| GO:0005666 | Cellular Component | RNA polymerase III complex | Interproscan |
| GO:0005736 | Cellular Component | RNA polymerase I complex | Interproscan |
| GO:0006351 | Biological Process | DNA-templated transcription | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03009 | RPB12, POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 | - | Purine metabolism | ko00230 | PMID: 28812709 |
| Pyrimidine metabolism | ko00240 | PMID: 28812709 | |||
| RNA polymerase | ko03020 | PMID: 28812709 | |||
| Cytosolic DNA-sensing pathway | ko04623 | PMID: 28812709 | |||
| Huntington's disease | ko05016 | PMID: 28812709 | |||
| Epstein-Barr virus infection | ko05169 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_24692-2.21 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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