Gene detail

Detailed information of Bpl_scaf_24428-2.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_24428-2.10	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Bpl_scaf_24428	329456	359468	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_24428-2.10

ATGAATACCAAAAAGAAGGGGGAAAAAGAAGAAAAAAGAAAAAAAAAAAAGAGGACAATACACGGATTTCTAAAGCACATAGCTCACGTGGTTATTATTCAAGGTTTTAGGAGTTACAGAGATCAGACTGTTGTAGATCCATTTAGTCCTAAACACAATGTCATTGTTGGGAGAAATGGATCAGGAAAAAGTAACTTCTTCTATGCTATCCAGTTCGTATTGTCAGATGAATTCAGTCACTTGAGACCAGAACAAAGACAAGCTTTACTCCATGAAGGAACAGGACCAAGAGTTATATCTGCTTTTGTGGAAATCATATTCGACAATTCTGATAATAGAATTCCAATTGAAAAGGATGAAGTGGTATTACGTCGAGTTATTGGTTCCAAGAAAGATCAATACTTTTTAGATAAGAAAATGGTTACGAAAGGTGATGTAATGAACTTGTTAGAAAGTGCTGGATTCTCCAGAAGTAATCCTTATTATATTGTCAAACAAGGAAAGATAAACCAAATGGCAACAGCTCCTGATTCACAAAGATTAAAACTACTTCGTGAAGTAGCAGGCACTAAAGTGTATGATGAGAGAAAAGAAGAAAGTAAAGTTATATTGAGAGAAACAGAGGGCAAAAGAGAAAAGATTAATGATCTGCTGAAATATATTGAGGAAAGACTTGCCACATTGGAAGAGGAAAAAGAAGAACTGAAAGAATATCAAAAATGGGACAAGATGAGGAGATCTTTGGAATATACAATACATGATCATGAACTTCGTGACACAAGGAAAAAGTTAGATGAGCTTCAAGACAAGAGAGAAAACAGTGGAAGTAATACACAAAAAATAAGAGATTTACAGCAGTCATCTACAGACAAAGTCAAGGCTGTAAACAAAGATCTGAGAGACTTGAAATCTCGCATGCAGACTATCCATGATGAAAAGGAACAACAAAGTAGTGAAAATCAAGATTTAACAAAGAAAAAAGCCAAACTAGAACTGAACATTAAAGATATACAAGATGAACTAGAAGGAGATAAAAGTGCCAGGAAAAAAGCTGAAGAAGAATTGAAAAAGGTTAATGAAAAGATTGGAAAGACACAGAAACAATTAGAGGAGATTACACCAAAGTATGATGCCCAACAAAAACAAGAAGAAGAATGTACACGACAGTTGTCAATGGCAGAACAAAGAAGAAAAGAACTGTATGCCAAACAAGGTAGAGGGAACCAGTTTACATCTCGAGATGACAGAGATTCCTGGATCAAGAAAGAGTTGAAATCATTAAACAGAGCAATCAGAGATAAAGAAGAACAGATAAAAAGGCTGAGAGAAGATTTGGTGAATGATGATAAAAGGGCAGAACACCTCAGGACACAGATTCAGGAAGTTTCCAGTAAAATTGACCAGAACAAAGACATTATAGGACAAAATGACAAAAACAATATTGAGATGAAAAGAGAGAGAGATTCTATGATGAATGAAAGAAATGCATTATGGAGACAAGAAAACATTTTACAACAAGAGATCAACACCACAAGAGAAGAACTAAGTAAAAAAGAACAAGGATTAAGATCTATGACAGGAAAGGGTATTCTGAATGGTATGGACAGTGTGAAGAAAGTACTACAATCATTTACAGATCAAGGCAAATATACTGATGTTGTCAATGGTTACAAGGGTATACTGATAGAAAACTTAGACACAGAAAAAACTTTCTTTACATGTGTAGAAGTTACAGCAGGCAGCAGGTTGTTTCATCATATTGTTGACACAGATAAAACAGGAACAAAAATATTAACTGAAATGAATAGATTACGATTACCAGGGGAGGTAACTTTCATGCCATTAAACAGACTGGATGCTAGAGATACCAACTATCCTGATACCAGTGATGCCATACCAATGATTTCTAAATTAAAGTTTGACAATGAATATGAACGTGCAATAAAACATGTTTTTGGTAAAACATTGATATGTCGGAACATGGAAACAGCCACACAGATTGCCAGAACACAAAACTTAGATTGCATCACGTTAGATGGTGACCAAGTGAGTAGACGTGGTGCTTTAACTGGGGGTTTTTATGATACTAGACGATCTCGACTCGATCTGCAGAAGAGTAAATTAGAATTAACACAGAAAATGGAATCTCAGGAAACAGAATATAAAGAACATAAATCTAAACTGGAAAAACTAGAATCTAAAATGAACAATATTGTTAGTGAAATGCAAAAAACTGAAACCAGAAATAGTAAAAATAAAGACACCTTTGATAAAATGAGAGCAGATTTAAGACTGATGACAGAAGAATTAAATTCTATAGAAAAGGGCAAGTCACCTAAGGAAAAAAGTGTTGCCAGTTTACATTCAAGTTTAGAAGCCATGCAAGGATCAGCAGCTTCCCTCAATGAAGAGTTAGGCTCTGATCTATTATCACAGCTAAGTGTAGAAGATCAGGGAGAAGTTGATAAACTTAATGATAATATAAAACAGCTGACTCAACAAAATAAAGAGGCATTAACAGAGAGAATAAGGTTGGAAGGTGATAAAAACAAACTAGAAAATTTACTACACAATAATTTAATGAAGAAGAGAGACAGATTAACCAATGATTTACAGGAGGTTTCTGCTGAAGATAGAAAAAACAAACTGGAAACTCTCTCTCAGGAACTACAGACAGTAGACTCACGGGTTCATGAAATCAAATCTCAAACAAAAGACTTAGATGGACAACTGGAGAAAATGAACAAAGAACAGAAATCTTTACAGAACAAGATTGAACATTGGAAGGCTCAGGAGAAGGAATACCAGGATAAGATAAATGAAGATGCCAAAGAACTAGATAAAATGACAAATAAACAAAGTTTGTTGTTAAAAAAGAAAGATGAATGCATGAAAAAAATTAGAGAATTAGGATCTCTTCCAAGTGATGCCTTTGAAAAATATCAAAACCTTAGTTCTAAACAGTTGTTTAAGAAATTAGAACAGTGCAATACAGAGCTGAAAAAATACAGTCATGTAAATAAAAAGGCTTTAGATCAATTTGTGAACTTTTCTGATCAAAAGGAAAAATTGATCAAAAGGAAAGAAGAACTTGATAGTGCTCATAAGGCAATTTTAGATCTCATGAGTGCATTAGATCATAGGAAATATGAAGCTATTCAGTTAACATTTAAACAGGTATCTAAGTATTTTAGTGAAATATTTAAGAATCTAGCACCCCAAGGTCATGCAGTGTTAGTGATGAAGAAAGGAGATATGGATCAAAATGGTGAAGATGAAGAAGGATCGTCTCAGGAGGTTCCTCTCGTAGAACAATTTACTGGAGTTGGTATCAAAGTATCATTTACAGGCAACAAAGCAGAGATGAGAGACATGCAGCAATTATCTGGTGGACAGAAATCTCTCGTTGCTCTGACGTTGATCTTTGCTATACAGAAATGTGACCCTGCACCATTCTATCTGTTTGATGAAATAGATCAAGCTTTAGATTCTATACATAGAAAAGCAGTGGCA

Transcript

Bpl_scaf_24428-2.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR024704	Family	Structural maintenance of chromosomes protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR041741	Domain	Structural maintenance of chromosomes 3, ABC domain, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43977	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0007064	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034990	Cellular Component	mitotic cohesin complex	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan
GO:0061775	Molecular Function	cohesin loader activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06669	SMC3, CSPG6; structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)	-	Cell cycle	ko04110	PMID: 28812709
			Cell cycle - yeast	ko04111	PMID: 28812709
			Meiosis - yeast	ko04113	PMID: 28812709
			Oocyte meiosis	ko04114	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_24428-2.10 global RNA-seq network