| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_24370-17.13 | FLAP ENDONUCLEASE FAMILY MEMBER | Bpl_scaf_24370 | 1722734 | 1739406 | + |
| CDS | |||||
| Bpl_scaf_24370-17.13 | |||||
| Transcript |
| Bpl_scaf_24370-17.13 |
| Protein |
| Bpl_scaf_24370-17.13 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00752 | XPG_N | XPG N-terminal domain | Family | Interproscan |
| PF00867 | XPG_I | XPG I-region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006084 | Family | XPG/Rad2 endonuclease | Interproscan |
| IPR006085 | Domain | XPG, N-terminal | Interproscan |
| IPR006086 | Domain | XPG-I domain | Interproscan |
| IPR008918 | Conserved_site | Helix-hairpin-helix motif, class 2 | Interproscan |
| IPR019974 | Conserved_site | XPG conserved site | Interproscan |
| IPR023426 | Family | Flap endonuclease 1 | Interproscan |
| IPR029060 | Homologous_superfamily | PIN-like domain superfamily | Interproscan |
| IPR036279 | Homologous_superfamily | 5'-3' exonuclease, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11081 | FLAP ENDONUCLEASE FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000287 | Molecular Function | magnesium ion binding | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0004518 | Molecular Function | nuclease activity | Interproscan |
| GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0008409 | Molecular Function | 5'-3' exonuclease activity | Interproscan |
| GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds | Interproscan |
| GO:0017108 | Molecular Function | 5'-flap endonuclease activity | Interproscan |
| GO:0030145 | Molecular Function | manganese ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K04799 | FEN1, RAD2; flap endonuclease-1 | EC:3.-.-.- | DNA replication | ko03030 | PMID: 28812709 |
| Base excision repair | ko03410 | PMID: 28812709 | |||
| Non-homologous end-joining | ko03450 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_24370-17.13 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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