Gene detail

Detailed information of Bpl_scaf_24297-1.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_24297-1.12	RNA AND EXPORT FACTOR BINDING PROTEIN	Bpl_scaf_24297	143319	154948	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_24297-1.12

ATGTCGTTTTTATTGCAGTCAAGAGATACACCAGATGTATGGAAACATGATATGTTTGATGGAGATGTTGGAACAATAAAGAGAGGAGGGATTGGTGGTGGGGGTGCTACTGGAAAACTTCACATTGATAATTTAGACTTTGGAGTTAATGACTCAGATATCCAGGAATTGTTTGCAGAATTTGGTCCCTTAAAGAAGGCAGCTATACATTATGACAGATCTGGAAGATCATTAGGCACAGCTGAAGTTATATATGAGAGACATTCAGATGCTGCAAAAGCAATGAAACAGTACAACAATGTGCCGTTAGATGGCCGACCTATGAATATACAGTTAATTGGTGCTTCAGATTCAGGTCCATCTGATGGATTTAATAGAAACAGACTTGGGGGAAGCAGAGGAGGTCGAGGTGGGGGAGGAGGAGGTGGAAGAGGATTTGGTGGAAATAACAGACGAGGAGGAAGTGGTGGTGGTGGTGGAGGTTTCAGAGGTCGTGGGGGACGAGGAGGAAGAGGGCGTGGAGGATCTAATAGAAAACCTAGAACAGCAGAAGAATTAGACGCAGAGTTAGATGCATACAATTCAAAGATGGACACAGATTGATAAGATGTTATACCAGTAGGAAATAATTGTGAAAAAGGAAGGTTATTCTCATGGACAAAGGATATTGTGATGAACTATTTATCTGTCCCAAACTTTGGAACTTGTTGAAACAAAAATTATTTTACAATGTATGTACATGTATGAAGTGGTTCCAACTGTGAAGAATACTGAATGAAATGTGTAAACTGAGACGATCTCCGTATTTGTATTTGTTTATTTCATGTGTTCCTTAAATGCAGCAACATCTAGCCGAACATTGTTAGAATTGTGAAGCCATAATTCATCAGAACAGACAAATGTTTCGGTGTTTAAATTAAATGACGACATCACAAATAAACTTGAGGAAAAGATTTAATTTTATTTGATTTTAGAATACTGACATTTGTTTGTCATTATGTAATATTTTTTTTTATTTCATAGTAATTTATGTTTTTAGATGAATTAAATGTAGCTGTAATGGTTTTGACAAATGGTCATATTTTATATAATAGTTGGTTATATTTATAGCTGGTGCATTTAGTAATATTGGGAAAAGCTTTCAGACGTAGTTTAACTTCGTGATCGAATATGGTGAATTCTGTGCAATCTTAATTTTTTTGTTTCGTTTGTTCGTGGCATTAATATCATTGTGTTTTAATGGAGCAGCTATTTGTACTTTAATAAAAAAAATTGTTTCCCCTTCAAATACCAGTAATTAATTTAGATAATAACACTTATAATTGAATTTTAATGGTCTAAATGGACAAATTTATAAAATTGTGTAGCAATTGGTCAGAAACATAAATTTGTTCACTATTTGAATATTTAAGCAATCAACAGAAGTATTTTTCATAATGATAAGATATATGTAAGCCATGGTTTTATTTTAAATATTTGTTGAAAAGAGATTTGTGTATCATTTCATTTTTCATACAAGGTCAATAAAAGTTAAAACAGAGAACTCTTTACCGGTAATTGCCAGTAATAAAATTTTATTAAAACAAACATTATTAAAGCAAATTACATTTGTCATCAGCTTGCATTGAAGAATAGCTACATAATAAGTGTTCATTAATATACATATATATTGTTAAAACTGACTACATGCTGATTTTATACAAGAAAGTACATCTATCCTAATTGTATCATCTTTTTTTCAATTTAAATGACATTCTTGTACATTCTTAGGAGTAAAGAGTGAGTCATGATGGATTATTTTGAGTAAAAGATGAATGAAAATGTCACTAGAGAGGATCTGTTTTAATTTAAAATTTGAATATTATCTTCCAAATAGGAATGTCGGTTCAGTTTCTTTTACCATGTCATCCTCATTATCACCTTGTAAATAAAATATTTTTTATTGATTTCATTTATTATTCTTTTACCAGACATTAAACCTGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13865	FoP_duplication	C-terminal duplication domain of Friend of PRMT1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR025715	Domain	Chromatin target of PRMT1 protein, C-terminal	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051229	Family	ALYREF mRNA export adapter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12881	THOC4, ALY; THO complex subunit 4	-	Spliceosome	ko03040	PMID: 28812709
			RNA transport	ko03013	PMID: 28812709
			mRNA surveillance pathway	ko03015	PMID: 28812709
			Herpes simplex infection	ko05168	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_24297-1.12 global RNA-seq network